%0 Journal Article
%T In Silico Analysis of -Galactosidases Primary and Secondary Structure in relation to Temperature Adaptation
%A Vijay Kumar
%A Nikhil Sharma
%A Tek Chand Bhalla
%J Journal of Amino Acids
%D 2014
%I Hindawi Publishing Corporation
%R 10.1155/2014/475839
%X ¦Â-D-Galactosidases (EC 3.2.1.23) hydrolyze the terminal nonreducing ¦Â-D-galactose residues in ¦Â-D-galactosides and are ubiquitously present in all life forms including extremophiles. Eighteen microbial ¦Â-galactosidase protein sequences, six each from psychrophilic, mesophilic, and thermophilic microbes, were analyzed. Primary structure reveals alanine, glycine, serine, and arginine to be higher in psychrophilic ¦Â-galactosidases whereas valine, glutamine, glutamic acid, phenylalanine, threonine, and tyrosine are found to be statistically preferred by thermophilic ¦Â-galactosidases. Cold active ¦Â-galactosidase has a strong preference towards tiny and small amino acids, whereas high temperature inhabitants had higher content of basic and aromatic amino acids. Thermophilic ¦Â-galactosidases have higher percentage of ¦Á-helix region responsible for temperature tolerance while cold loving ¦Â-galactosidases had higher percentage of sheet and coil region. Secondary structure analysis revealed that charged and aromatic amino acids were significant for sheet region of thermophiles. Alanine was found to be significant and high in the helix region of psychrophiles and valine counters in thermophilic ¦Â-galactosidase. Coil region of cold active ¦Â-galactosidase has higher content of tiny amino acids which explains their high catalytic efficiency over their counterparts from thermal habitat. The present study has revealed the preference or prevalence of certain amino acids in primary and secondary structure of psychrophilic, mesophilic, and thermophilic ¦Â-galactosidase. 1. Introduction Microbes are widespread in most diverse environmental conditions including extreme salinity, pressure, pH, and temperature. These microbes, called extremophiles, produce enzymes which are capable of working under extreme conditions and attract much attention due to their industrial importance [1] and basic interest of science. Proteins undergo denaturation at both extreme ends of temperature, cold denaturation due to the temperature dependence of the hydrophobic effect [2] and thermal denaturation at high temperatures. The emphasis of a cold active protein is more on function than on structure and there has been much interest in thermophiles due to the possibility that life has a thermophilic origin, in deep-sea vents [3], and also due to their important biotechnological applications at higher temperatures. ¦Â-Galactosidases (EC 3.2.1.23) are among the most diverse enzymes on earth found in almost all life forms inhabiting at near zero to near 100 temperature. This enzyme is known to catalyze
%U http://www.hindawi.com/journals/jaa/2014/475839/