Immunome Research - oalib

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ISSN: 2333-9721
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Immunome Research

ISSN Print: 1745-7580

ISSN Online:

主页: http://immunome-research.net/

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NetMHCIIpan-2.0 - Improved pan-specific HLA-DR predictions using a novel concurrent alignment and weight optimization training procedure

Nielsen Morten,Justesen Sune,Lund Ole,Lundegaard Claus

Concept and application of a computational vaccinology workflow

S？llner Johannes,Heinzel Andreas,Summer Georg,Fechete Raul

State of the art and challenges in sequence based T-cell epitope prediction

Lundegaard Claus,Hoof Ilka,Lund Ole,Nielsen Morten

TAP Hunter: a SVM-based system for predicting TAP ligands using local description of amino acid sequence

Lam Tze,Mamitsuka Hiroshi,Ren Ee,Tong Joo

DC-ATLAS: a systems biology resource to dissect receptor specific signal transduction in dendritic cells

Cavalieri Duccio,Rivero Damariz,Beltrame Luca,Buschow Sonja I

Computer aided selection of candidate vaccine antigens

Flower Darren R,Macdonald Isabel K,Ramakrishnan Kamna,Davies Matthew N

Models of RNA virus evolution and their roles in vaccine design

Ojosnegros Samuel,Beerenwinkel Niko

Identification of conformational B-cell Epitopes in an antigen from its primary sequence

Ansari Hifzur,Raghava Gajendra PS

T-cell epitope prediction and immune complex simulation using molecular dynamics: state of the art and persisting challenges

Flower Darren R,Phadwal Kanchan,Macdonald Isabel K,Coveney Peter V

Factors important in evolutionary shaping of immunoglobulin gene loci

Barak Michal,Eilat Guy,Unger Ron,Mehr Ramit

Evolution of a cluster of innate immune genes (β-defensins) along the ancestral lines of chicken and zebra finch

Hellgren Olof,Ekblom Robert

Automated processing of label-free Raman microscope images of macrophage cells with standardized regression for high-throughput analysis

Milewski Robert J,Kumagai Yutaro,Fujita Katsumasa,Standley Daron M

An integrated approach to epitope analysis I: Dimensional reduction, visualization and prediction of MHC binding using amino acid principal components and regression approaches

Bremel Robert D,Homan E Jane

An integrated approach to epitope analysis II: A system for proteomic-scale prediction of immunological characteristics

Bremel Robert D,Homan E

Human immunome, bioinformatic analyses using HLA supermotifs and the parasite genome, binding assays, studies of human T cell responses, and immunization of HLA-A*1101 transgenic mice including novel adjuvants provide a foundation for HLA-A03 restricted CD8+T cell epitope based, adjuvanted vaccine protective against Toxoplasma gondii

Cong Hua,Mui Ernest J,Witola William H,Sidney John

Recent advances in B-cell epitope prediction methods

EL-Manzalawy Yasser,Honavar Vasant

Applying bioinformatics for antibody epitope prediction using affinity-selected mimotopes – relevance for vaccine design

Denisova Galina F,Denisov Dimitri A,Bramson Jonathan L

Polyfunctional CD4+ T cell responses to a set of pathogenic arenaviruses provide broad population coverage

Kotturi Maya F,Botten Jason,Maybeno Matt,Sidney John

Motif prediction to distinguish LPS-stimulated pro-inflammatory vs. antibacterial macrophage genes

Kollipara Rahul K,Perumal Narayanan B

A novel paradigm for cell and molecule interaction ontology: from the CMM model to IMGT-ONTOLOGY

Pappalardo Francesco,Lefranc Marie-Paule,Lollini Pier-Luigi,Motta Santo

Coregulation mapping based on individual phenotypic variation in response to virus infection

Nudelman German,Ge Yongchao,Hu Jianzhong,Kumar Madhu

Critical role of glycosylation in determining the length and structure of T cell epitopes

Szabó Tamás G,Palotai Robin,Antal Péter,Tokatly Itay

Functional recombinant MHC class II molecules and high-throughput peptide-binding assays

Justesen Sune,Harndahl Mikkel,Lamberth Kasper,Nielsen Lise-Lotte B

Of mice and humans: how good are HLA transgenic mice as a model of human immune responses?

Kotturi Maya F,Assarsson Erika,Peters Bjoern,Grey Howard

Genetic correlates of autoreactivity and autoreactive potential in human Ig heavy chains

Volpe Joseph M,Kepler Thomas B

Ribosomal protein mRNAs are translationally-regulated during human dendritic cells activation by LPS

Ceppi Maurizio,Clavarino Giovanna,Gatti Evelina,Schmidt Enrico K

Efficiency of the immunome protein interaction network increases during evolution

Ortutay Csaba,Vihinen Mauno

Peptide length significantly influences in vitro affinity for MHC class II molecules

O'Brien Cathal,Flower Darren R,Feighery Conleth

Data mining of cancer vaccine trials: a bird's-eye view

Cao Xiaohong,Maloney Karen B,Brusic Vladimir

Analysis and prediction of protective continuous B-cell epitopes on pathogen proteins

Sollner Johannes,Grohmann Rainer,Rapberger Ronald,Perco Paul

Expression analysis of G Protein-Coupled Receptors in mouse macrophages

Lattin Jane E,Schroder Kate,Su Andrew I,Walker John R

Large-scale analysis of human heavy chain V(D)J recombination patterns

Volpe Joseph M,Kepler Thomas B

Quantitative peptide binding motifs for 19 human and mouse MHC class I molecules derived using positional scanning combinatorial peptide libraries

Sidney John,Assarsson Erika,Moore Carrie,Ngo Sandy

EpitopeViewer: a Java application for the visualization and analysis of immune epitopes in the Immune Epitope Database and Analysis Resource (IEDB)

Beaver John E,Bourne Philip E,Ponomarenko Julia V

Strength in numbers: achieving greater accuracy in MHC-I binding prediction by combining the results from multiple prediction tools

Trost Brett,Bickis Mik,Kusalik Anthony

In silico characterization of immunogenic epitopes presented by HLA-Cw*0401

Tong Joo Chuan,Zhang Zong Hong,August J Thomas,Brusic Vladimir

Protein sequence database for pathogenic arenaviruses

Bui Huynh-Hoa,Botten Jason,Fusseder Nicolas,Pasquetto Valerie

ImmTree: Database of evolutionary relationships of genes and proteins in the human immune system

Ortutay Csaba,Siermala Markku,Vihinen Mauno

Amino acid biophysical properties in the statistical prediction of peptide-MHC class I binding

Ray Surajit,Kepler Thomas B

An analysis of the epitope knowledge related to Mycobacteria

Blythe Martin J,Zhang Qing,Vaughan Kerrie,de Castro Romulo

Using the natural evolution of a rotavirus-specific human monoclonal antibody to predict the complex topography of a viral antigenic site

McKinney Brett A,Kallewaard Nicole L,Crowe James E,Meiler Jens

IDR knowledge base for primary immunodeficiencies

Samarghitean Crina,V？liaho Jouni,Vihinen Mauno

A novel strategy for the identification of antigens that are recognised by bovine MHC class I restricted cytotoxic T cells in a protozoan infection using reverse vaccinology

Graham Simon P,Honda Yoshikazu,Pellé Roger,Mwangi Duncan M

Modeling the bound conformation of Pemphigus Vulgaris-associated peptides to MHC Class II DR and DQ Alleles

Tong Joo,Bramson Jeff,Kanduc Darja,Chow Selwyn

PREDTAP: a system for prediction of peptide binding to the human transporter associated with antigen processing

Zhang Guang,Petrovsky Nikolai,Kwoh Chee,August J Thomas

Improved method for predicting linear B-cell epitopes

Larsen Jens,Lund Ole,Nielsen Morten

In silico identification of opossum cytokine genes suggests the complexity of the marsupial immune system rivals that of eutherian mammals

Wong Emily SW,Young Lauren J,Papenfuss Anthony T,Belov Katherine

AntiJen: a quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data

Toseland Christopher P,Clayton Debra J,McSparron Helen,Hemsley Shelley L

An ontology for immune epitopes: application to the design of a broad scope database of immune reactivities

Sathiamurthy Muthuraman,Peters Bjoern,Bui Huynh-Hoa,Sidney John

Immunome Research

Petrovsky Nikolai

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