The invariance principle of enzyme enantioselectivity must be absolute because it is absolutely essential to the homochiral biological world. Most enzymes are strictly enantioselective, and tryptophanase is one of the enzymes with extreme absolute enantioselectivity for L-tryptophan. Contrary to conventional knowledge about the principle, tryptophanase becomes flexible to catalyze D-tryptophan in the presence of diammonium hydrogenphosphate. Since D-amino acids are ordinarily inert or function as inhibitors even though they are bound to the active site, the inhibition behavior of D-tryptophan and several inhibitors involved in this process was examined in terms of kinetics to explain the reason for this flexible enantioselectivity in the presence of diammonium hydrogenphosphate. Diammonium hydrogenphosphate gave tryptophanase a small conformational change so that D-tryptophan could work as a substrate. As opposed to other D-amino acids, D-tryptophan is a very bulky amino acid with a benzene ring in its heterocyclic moiety, and so we suggest that this structural feature makes the catalysis of D-tryptophan degradation possible, consequently leading to the flexible enantioselectivity. The present results not only help to understand the mechanism of enzyme enantioselectivity, but also shed light on the origin of homochirality.
References
[1]
Bonner, W.A. The origin and amplification of biomolecular chirality. Orig. Life Evol. Biosph.?1991, 21, 59–111, doi:10.1007/BF01809580.
Lazcano, A.; Miller, S.L. How long did it take for life to begin and evolve to cyanobacteria? J. Mol. Evol.?1994, 39, 546–554, doi:10.1007/BF00160399.
[4]
Bada, J.L.; Miller, S.L. Racemization and the origin of optically active organic compounds in living organisms. Biosystems?1987, 20, 21–26, doi:10.1016/0303-2647(87)90016-5.
[5]
Lahav, M. Question 4: Basic questions about the origin of life: On chirobiogenesis. Orig. Life Evol. Biosph.?2007, 37, 371–377, doi:10.1007/s11084-007-9101-6.
Bonner, W.A. Chirality and life. Orig. Life Evol. Biosph.?1995, 25, 175–190, doi:10.1007/BF01581581.
[8]
Reist, M.; Carrupt, P.A.; Francotte, E.; Testa, B. Chiral inversion and hydrolysis of thalidomide: Mechanisms and catalysis by bases and serum albumin, and chiral stability of teratogenic metabolites. Chem. Res. Toxicol.?1998, 11, 1521–1528, doi:10.1021/tx9801817.
[9]
Newton, W.A.; Snell, E.E. Catalytic properties of tryptophanase, a multifunctional pyridoxal phosphate enzyme. Proc. Natl. Acad. Sci. USA?1964, 51, 382–389, doi:10.1073/pnas.51.3.382.
[10]
Shimada, A.; Nakamura, I. Degradation of D-tryptophan by tryptophanase under high salt concentration. Viva Orig.?1992, 20, 147–162.
[11]
Shimada, A.; Ozaki, H.; Saito, T.; Fujii, N. Tryptophanase-catalyzed L-tryptophan synthesis from D-serine in the presence of diammonium hydrogen phosphate. Int. J. Mol. Sci.?2009, 10, 2578–2590, doi:10.3390/ijms10062578.
[12]
Shimada, A.; Ozaki, H.; Saito, T.; Fujii, N. Reaction pathway of tryptophanase-catalyzed L-tryptophan synthesis from D-serine. J. Chromatogr. B?2011, 879, 3289–3295, doi:10.1016/j.jchromb.2011.04.028.
[13]
Kulikova, V.V.; Zakomirdina, L.N.; Bazhulina, N.P.; Dementieva, I.S.; Faleev, N.G.; Gollnick, P.D.; Demidkina, T.V. Role of arginine 226 in the mechanism of tryptophan indole-lyase from Proteus vulgaris. Biochemistry?2003, 68, 1181–1188, doi:10.1023/B:BIRY.0000009131.78603.8b.
[14]
Shimada, A. Activity on D-tryptophan Attributable to Slight Conformational Change of Tryptophanase in Highly Concentrated Ammonium Phosphate Solution. In Enzymes Involved in the Metabolism of D-Amino Acids: Practical Methods and Protocols; Nova Science Publishers: New York, NY, USA, 2010; Volume 4, pp. 173–192.
[15]
Hanson, K.R. Phenylalanine ammonia-lyase: A model for the cooperativity kinetics induced by d- and l-phenylalanine. Arch. Biochem. Biophys.?1981, 211, 567–574.
[16]
Shimada, A.; Nakamura, I. Degradation of D-tryptophan by tryptophanase under high salt concentration. Viva Orig.?1992, 20, 147–162.
[17]
Bentley, R. Diastereoisomerism, contact points, and chiral selectivity: A four-site saga. Arch. Biochem. Biophys.?2003, 414, 1–12, doi:10.1016/S0003-9861(03)00169-3.
[18]
Snell, E.E. Tryptophanase: Structure, catalytic activities, and mechanism of action. Adv. Enxymol. Relat. Areas Mol. Biol.?1975, 42, 287–333.
[19]
Shimada, A.; Kogure, H.; Shishido, H.; Nakamura, I. Reaction pathway of tryptophanase degrading D-tryptophan. Amino Acids?1997, 12, 379–383, doi:10.1007/BF01373018.
[20]
Polgár, L. The catalytic triad of serine peptidases. Cell. Mol. Life Sci.?2005, 62, 2161–2172, doi:10.1007/s00018-005-5160-x.
[21]
Demidkina, T.V. ; Antson, A.A.; Faleev, N.G.; Phillips, R.S.; Zakomirdina, L.N. Spatial structure and mechanism of tyrosine phenol-lyase and tryptophan indole-lyase. Mol. Biol. (Moskow.)?2009, 43, 295–308.
[22]
Sundararaju, B.; Antson, A.A.; Phillips, R.S.; Demidkina, T.V.; Barbolina, M.V.; Gollnick, P.; Dodson, G.G.; Wilson, K.S. The crystal structure of Citrobacter freundii tyrosinephenol-lyase complexed with 3-(4'-hydroxyphenyl)propionicacid, together with site-directed mutagenesis and kineticanalysis, demonstrates that arginine 381 is required for substratespecificity. Biochemistry?1997, 36, 6502–6510.
Chen, H.; Phillips, R.S. Binding of phenol and analogues to alanine complexes of tyrosine phenol-lyase from Citrobacter freundii: Implications for the mechanisms of α, β-elimination and alanine racemization. Biochemistry?1993, 32, 11591–11599, doi:10.1021/bi00094a016.