Proteinases secreted by the oomycete Phytophthora infestans (Mont.) de Bary, Rhizoctonia solani, and Fusarium culmorum belonging to different families of fungi have been studied to determine if the exoenzyme secretion depends on the environmental conditions and the phylogenetic position of the pathogen. The substrate specificity of the extracellular proteinases of F. culmorum, R. solani, and P. infestans and their sensitivity to the action of synthetic and protein inhibitors suggest that they contain trypsin-like and subtilisin-like enzymes regardless of culture medium composition. The relation of trypsin-like and subtilisin-like enzymes is dependent on the culture medium composition, especially on the form of nitrogen nutrition, particularly in the case of the exoenzymes secreted by R. solani. Phylogenetic analyses have shown that the exoproteinase set of ascomycetes and oomycetes has more similarities than basidiomycetes although they are more distant relatives. Our data suggests that the multiple proteinases secreted by pathogenic fungi could play different roles in pathogenesis, increasing the adaptability and host range, or could have different functions in survival in various ecological habitats outside the host. 1. Introduction Fungi and oomycetes are responsible for many of the most devastating plant diseases that lead to very significant losses in the agricultural sector worldwide. Approximately 100,000 species of fungi and oomycetes have been described, but only a very small proportion of these are pathogenic [1]. However, phylogenetic studies have shown that disease-causing pathogens are not necessarily closely related to each other. In fact, they are spread throughout all taxonomic groups of fungi, often showing a close evolutionary relationship to nonpathogenic species [2]. It therefore seems likely that phytopathogenicity has evolved as a trait many times during fungal and oomycete evolution [2]. A significant effort has been made into the identification of pathogenicity determinants such as individual genes that are essential for a pathogen to invade a host plant successfully but that are dispensable for saprophytic growth [3]. Despite the different origin and different site on the phylogenetic tree of the true fungi and oomycetes [4], it has been shown that a range of secreted proteins known as effectors are important for establishing infection of the host plant [2]. These secreted proteins can suppress plant defenses and subvert cellular processes to suit the needs of invading pathogens. They include a number of secreted proteinases,
References
[1]
A. Tunlid and N. J. Talbot, “Genomics of parasitic and symbiotic fungi,” Current Opinion in Microbiology, vol. 5, no. 5, pp. 513–519, 2002.
[2]
R. Oliver and A. Osbourn, “Molecular dissection of fungal phytopathogenicity,” Microbiology, vol. 141, no. 1, pp. 1–9, 1995.
[3]
D. A. Fitzpatrick, M. E. Logue, J. E. Stajich, and G. Butler, “A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis,” BMC Evolutionary Biology, vol. 6, article 99, 2006.
[4]
J. Guarro, J. Gené, and A. M. Stchigel, “Developments in fungal taxonomy,” Clinical Microbiology Reviews, vol. 12, no. 3, pp. 454–500, 1999.
[5]
N. D. Rawlings, D. P. Tolle, and A. J. Barrett, “MEROPS: the peptidase database,” Nucleic Acids Research, vol. 32, pp. D160–D164, 2004.
[6]
D. M. Soanes, I. Alam, M. Cornell et al., “Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis,” PLoS One, vol. 3, no. 6, Article ID e2300, 2008.
[7]
R. J. St Leger, L. Joshi, and D. W. Roberts, “Adaptation of proteases and carbohydrases of saprophytic, phytopathogenic and entomopathogenic fungi to the requirements of their ecological niches,” Microbiology, vol. 143, no. 6, pp. 1983–1992, 1997.
[8]
Ya. E. Dunaevskii, E. A. Golubeva, T. N. Gruban, G. A. Belyakova, and M. A. Belozerskii, “Regulation of secretion of extracellular proteinases of filamentous fungi Botritis sinerea Fr,” Journal of Russian Phytopathological Society, vol. 2, no. 1, pp. 39–44, 2001.
[9]
Ya. E. Dunaevskii, T. N. Gruban, G. A. Belyakova, and M. A. Belozerskii, “Extracellular proteinases of filamentous fungi as potential markers of phytopathogenesis,” Microbiology, vol. 75, no. 6, pp. 649–652, 2006.
[10]
A. G. Dubovenko, Ya. E. Dunaevskii, M. A. Belozersky, B. Oppert, J. C. Lord, and E. N. Elpidina, “Trypsin-like proteins of the fungi as possible markers of pathogenicity,” Fungal Biology, vol. 114, no. 2-3, pp. 151–159, 2010.
[11]
M. B. Rao, A. M. Tanksale, M. S. Ghatge, and V. V. Deshpande, “Molecular and biotechnological aspects of microbial proteases,” Microbiology and Molecular Biology Reviews, vol. 62, no. 3, pp. 597–635, 1998.
[12]
J. Saboti?, T. Tr?ek, T. Popovi?, and J. Brzin, “Basidiomycetes harbour a hidden treasure of proteolytic diversity,” Journal of Biotechnology, vol. 128, no. 2, pp. 297–307, 2007.
[13]
M. Kunitz, “Crystalline soybean trypsin inhibitor. Part II: general properties,” Journal of General Physiology, vol. 30, no. 4, pp. 291–310, 1947.
[14]
B. F. Erlanger, N. Kokowsky, and W. Cohen, “The preparation and properties of two new chromogenic substrates of trypsin,” Archives of Biochemistry and Biophysics, vol. 95, no. 2, pp. 271–278, 1961.
[15]
U. K. Laemmli, “Cleavage of structural proteins during the assembly of the head of bacteriophage T4,” Nature, vol. 227, no. 5259, pp. 680–685, 1970.
[16]
C. Heussen and E. B. Dowdle, “Electrophoretic analysis of plasminogen activators in polyacrylamide gels containing sodium dodecyl sulfate and copolymerized substrates,” Analytical Biochemistry, vol. 102, no. 1, pp. 196–202, 1980.
[17]
M. M. Bradford, “A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein dye binding,” Analytical Biochemistry, vol. 72, no. 1-2, pp. 248–254, 1976.
[18]
B. L. Cohen, “Regulation of intracellular and extracellular neutral and alkaline proteases in Aspergillus nidulans,” Journal of General Microbiology, vol. 79, no. 2, pp. 311–320, 1973.
[19]
C. Fortelius and P. Markkanen, “Nutritional regulation of proteinase production in the fungus, Tritirachium album,” Journal of Industrial Microbiology and Biotechnology, vol. 24, no. 6, pp. 369–373, 2000.
[20]
S. Kamoun, “Molecular genetics of pathogenic oomycetes,” Eukaryotic Cell, vol. 2, no. 2, pp. 191–199, 2003.
[21]
A. Y. Rossman and M. E. Palm, “Why are phytophthora and other oomycota not true fungi?” Outlooks on Pest Management, vol. 17, no. 5, pp. 217–219, 2006.
[22]
S. L. Baldauf, A. J. Roger, I. Wenk-Siefert, and W. F. Doolittle, “A kingdom-level phylogeny of eukaryotes based on combined protein data,” Science, vol. 290, no. 5493, pp. 972–977, 2000.
[23]
R. J. S. Leger, S. E. Screen, and B. Shams-Pirzadeh, “Lack of host specialization in Aspergillus flavus,” Applied and Environmental Microbiology, vol. 66, no. 1, pp. 320–324, 2000.
[24]
R. J. St Leger, J. O. Nelson, and S. E. Screen, “The entomopathogenic fungus Metarhizium anisopliae alters ambient pH, allowing extracellular protease production and activity,” Microbiology, vol. 145, no. 10, pp. 2691–2699, 1999.
[25]
N. Allain-Boulé, C. A. Lévesque, C. Martinez, R. R. Bélanger, and R. J. Tweddell, “Identification of Pythium species associated with cavity-spot lesions on carrots in eastern Quebec,” Canadian Journal of Plant Pathology, vol. 26, no. 3, pp. 365–370, 2004.
[26]
R. C. Ploetz, “Pythium splendens is an opportunistic pathogen of carambola, Averrhoa carambola,” Mycopathologia, vol. 157, no. 2, pp. 225–231, 2004.
[27]
T. A. Revina, G. V. Kladnitskaya, N. G. Gerasimova, E. L. Gvozdeva, and T. A. Valueva, “Protein trypsin inhibitor from potato tubers,” Biochemistry (Moscow), vol. 75, no. 1, pp. 36–40, 2010.
[28]
G. Hu and R. J. St. Leger R.J., “A phylogenomic approach to reconstructing the diversification of serine proteases in fungi,” Journal of Evolutionary Biology, vol. 17, no. 6, pp. 1204–1214, 2004.
[29]
Ya. E. Dunaevskii, T. N. Gruban, G. A. Belyakova, and M.A. Belozerskii, “Enzyme secreted by filamentous fungi: regulation of secretion and purification of extracellular protease of Trichoderma harzianum,” Biochemistry (Moscow), vol. 65, no. 6, pp. 848–853, 2000.
[30]
M. Richardson and L. Cossins, “Chymotryptic inhibitor I from potatoes: the amino acid sequences of subunits B, C and D,” FEBS Letters, vol. 45, no. 1, pp. 11–13, 1974.
[31]
V. V. Mosolov, G. V. Kolosova, T. A. Valueva, and L. A. Dronova, “Trypsin inhibitor from Gleditsia triacanthos (L.),” Biokhimiya, vol. 47, no. 5, pp. 797–802, 1982.
[32]
T. A. Revina, A. S. Speranskaya, G. V. Kladnitskaya, A. B. Shevelev, and T. A. Valueva, “Subtilisin protein inhibitor from Potato Tubers,” Biochemistry (Moscow), vol. 69, no. 10, pp. 1092–1098, 2004.