Phomopsis seed decay (PSD) of soybean is caused primarily by the fungal pathogen Phomopsis longicolla Hobbs along with other Phomopsis and Diaporthe spp. This disease causes poor seed quality and suppresses yield in most soybean-growing countries. Infected soybean seeds can be symptomless, but are typically shriveled, elongated, cracked, and have a chalky white appearance. Development of PSD is sensitive to environmental conditions. Hot and humid environments favor pathogen growth and disease development. Several control strategies have been used to manage PSD and reduce its impact; however, the use of resistant cultivars is the most effective method for controlling PSD. Efforts have been made to identify sources of PSD resistance in the past decades. At least 28 soybean lines were reported to have certain levels of PSD resistance in certain locations. Inheritance of resistance to PSD has been studied in several soybean lines. In this paper, general information about the disease, the causal agent, an overview of research on evaluation and identification of sources of resistance to PSD, and inheritance of resistance to PSD are presented and discussed. 1. Introduction Phomopsis seed decay (PSD) of soybean, Glycine max (L.) Merrill, is caused primarily by the fungal pathogen Phomopsis longicolla Hobbs et al. [1] along with other Phomopsis and Diaporthe spp. This disease causes poor seed quality and suppresses yield in most soybean-growing countries, especially in the mid-southern region of the United States [2, 3]. PSD severely affects soybean seed quality due to reduction in seed viability and oil content, alteration of seed composition, and increased frequencies of moldy and/or split beans [4–7]. Development of PSD is sensitive to environmental conditions. Hot and humid environmental conditions, especially during the period from the pod fill through harvest stages, favor pathogen growth and disease development [2, 8–11]. PSD has been reported to cause significant economic losses [4, 12]. Annual yield loss caused by PSD in the United States from 1996 to 2007 ranged from 0.38 to 0.43 million metric tons (MMT) [13]. PSD has been exacerbated in recent years because of the use of the early soybean production system (ESPS), which generally involves planting of early-maturing cultivars in April to avoid the late-season droughts typical of the region in the mid-southern USA [14]. Unfortunately, seed infection by P. longicolla was high in some cultivars that matured in July or August, when high temperatures and high humidity were conducive to PSD development
References
[1]
T. W. Hobbs, A. F. Schmitthenner, and G. A. Kuter, “A new Phomopsis species from soybean,” Mycologia, vol. 77, no. 4, pp. 535–544, 1985.
[2]
S. Li, “Phomopsis seed decay of soybean,” in Soybean—Molecular Aspects of Breeding, A. Sudaric, Ed., pp. 277–292, InTech, Vienna, Austria, 2011.
[3]
J. B. Sinclair, “Phomopsis seed decay of soybeans—a prototype for studying seed disease,” Plant Disease, vol. 77, pp. 329–334, 1993.
[4]
P. R. Hepperly and J. B. Sinclair, “Quality losses in Phomopsis—infected soybean seeds,” Phytopathology, vol. 68, pp. 1684–1687, 1978.
[5]
J. C. Rupe, “Effects of temperature on the rate of infection of soybean seedlings by Phomopsis longicolla,” Canadian Journal of Plant Pathology, vol. 12, no. 1, pp. 43–47, 1990.
[6]
J. C. Rupe and R. S. Ferriss, “Effects of pod moisture on soybean seed infection by Phomopsis sp.,” Phytopathology, vol. 76, pp. 273–277, 1986.
[7]
J. A. Wrather, J. G. Shannon, W. E. Stevens, D. A. Sleper, and A. P. Arelli, “Soybean cultivar and foliar fungicide effects on Phomopsis sp. seed infection,” Plant Disease, vol. 88, no. 7, pp. 721–723, 2004.
[8]
A. J. Balducchi and D. C. McGee, “Environmental factors influencing infection of soybean seeds by Phomopsis and Diaporthe species during seed maturation,” Plant Disease, vol. 71, pp. 209–212, 1987.
[9]
K. T. Kmetz, C. W. Ellett, and A. F. Schmitthenner, “Soybean seed decay: sources of inoculum and nature of infection,” Phytopathology, vol. 69, pp. 798–801, 1979.
[10]
G. L. Hartman, J. B. Sinclair, and J. C. Rupe, Compendium of Soybean Diseases, American Phytopathological Society, St. Paul, Minn, USA, 4th edition, 1999.
[11]
J. A. Wrather, D. A. Sleper, W. E. Stevens, J. G. Shannon, and R. F. Wilson, “Planting date and cultivar effects on soybean yield, seed quality, and Phomopsis sp. seed infection,” Plant Disease, vol. 87, no. 5, pp. 529–532, 2003.
[12]
R. E. Baird, S. Abney, and B. G. Mullinix, “Fungi associated with pods and seeds during the R6 and R8 stages of four soybean cultivars in Southwestern Indiana,” Phytoprotection, vol. 82, no. 1, pp. 1–11, 2001.
[13]
J. A. Wrather and S. R. Koenning, “Effects of diseases on soybean yields in the United States 1996 to 2007,” Plant Health Progress, 2009.
[14]
L. G. Heatherly, “Early soybean production system (ESPS),” in Soybean Production in the Midsouth, L. G. Heatherly and H. F. Hodges, Eds., pp. 103–118, CRC Press, Boca Raton, Fla, USA, 1999.
[15]
W. L. Mayhew and C. E. Caviness, “Seed quality and yield of early-planted, short-season soybean genotypes,” Agronomy Journal, vol. 86, no. 1, pp. 16–19, 1994.
[16]
S. R. Koenning, “Southern United States soybean disease loss estimate for 2009,” in Proceedings of the Southern Soybean Disease Workers 37th Annual Meeting, p. 1, Pensacola Beach, Fla, USA, 2010.
[17]
H. C. Minor, E. A. Brown, and M. S. Zimmerman, “Developing soybean varieties with genetic resistance to Phomopsis spp.,” Journal of the American Oil Chemists' Society, vol. 72, no. 12, pp. 1431–1434, 1995.
[18]
E. W. Jackson, P. Fenn, and P. Chen, “Inheritance of resistance to Phomopsis seed decay in soybean PI 80837 and MO/PSD-0259 (PI 562694),” Crop Science, vol. 45, no. 6, pp. 2400–2404, 2005.
[19]
M. S. Pathan, K. M. Clark, J. A. Wrather et al., “Registration of soybean germplasm SS93-6012 and SS93-6181 resistant to Phomopsis seed decay,” Journal of Plant Registrations, vol. 3, no. 1, pp. 91–93, 2009.
[20]
K. W. Roy, B. C. Keith, and C. H. Andrews, “Resistance of hard seeded soybean lines to seed infection by Phomopsis, other fungi and soybean mosaic virus,” Canadian Journal of Plant Pathology, vol. 16, no. 2, pp. 122–128, 1994.
[21]
S. Li, P. Chen, G. L. Hartman, J. Smith, and R. Nelson, “Research highlights on soybean Phomopsis seed decay in the US: pathogen characterization, germplasm screening, and genetic resistance,” in Proceedings of the 8th Abstracts of 2009 World Soybean Research Conference, pp. 91–92, Beijing, China, August 2009.
[22]
R. K. Velicheti, C. Lamison, L. M. Brill, and J. B. Sinclair, “Immunodetection of Phomopsis species in asymptomatic soybean plants,” Plant Disease, vol. 77, pp. 70–73, 1993.
[23]
M. M. Kulik and J. B. Sinclair, “Phomopsis seed decay,” in Compendium of Soybean Diseases, G. L. Hartman, J. B. Sinclair, and J. C. Rupe, Eds., pp. 31–32, American Phytopathological Society, St. Paul, Minn, USA, 1999.
[24]
A. Mengistu, L. Castlebury, R. Smith, and J. Ray, “Seasonal progress of Phomopsis longicolla infection on soybean plant parts and its relationship to seed quality,” Plant Disease, vol. 93, no. 10, pp. 1009–1018, 2009.
[25]
A. G. Xue, M. J. Morrison, E. Cober et al., “Frequency of isolation of species of Diaporthe and Phomopsis from soybean plants in Ontario and benefits of seed treatments,” Canadian Journal of Plant Pathology, vol. 29, no. 4, pp. 354–364, 2007.
[26]
T. C. Harrington, J. Steimel, F. Workneh, and X. B. Yang, “Molecular identification of fungi associated with vascular discoloration of soybean in the North Central United States,” Plant Disease, vol. 84, no. 1, pp. 83–89, 2000.
[27]
S. G. Lehman, “Pod and stem blight of the soybean,” Annals of the Missouri Botanical Garden, vol. 10, no. 2, pp. 111–178, 1923.
[28]
J. B. Sinclair, “Diaporthe—Phomopsis,” in Compendium of Soybean Diseases, G. L. Hartman, J. B. Sinclair, and J. C. Rupe, Eds., p. 31, American Phytopathological Society, St. Paul, Minn, USA, 1999.
[29]
G. N. Agrios, Plant Pathology, Academic Press, San Diego, Calif, USA, 1999.
[30]
M. C. Shurtleff and C. W. Averre III, Glossary of Plant-Pathological Terms, American Phytopathological Society, St. Paul, Minn, USA, 1997.
[31]
S. Li, J. Smith, and R. Nelson, “Resistance to Phomopsis seed decay identified in maturity group V soybean plant introductions,” Crop Science, vol. 51, no. 6, pp. 2681–2688, 2011.
[32]
S. Li, G. L. Hartman, and D. L. Boykin, “Aggressiveness of Phomopsis longicolla and other Phomopsis spp. on soybean,” Plant Disease, vol. 94, no. 8, pp. 1035–1040, 2010.
[33]
S. Li, C. A. Bradley, G. L. Hartman, and W. L. Pedersen, “First report of Phomopsis longicolla from velvetleaf causing stem lesions on inoculated soybean and velvetleaf plants,” Plant Disease, vol. 85, no. 9, p. 1031, 2001.
[34]
A. W. Zhang, G. L. Hartman, L. Riccioni, W. D. Chen, R. Z. Ma, and W. L. Pedersen, “Using PCR to distinguish Diaporthe phaseolorum and Phomopsis longicolla from other soybean fungal pathogens and to detect them in soybean tissues,” Plant Disease, vol. 81, no. 10, pp. 1143–1149, 1997.
[35]
A. W. Zhang, L. Riccioni, W. L. Pedersen, K. P. Kollipara, and G. L. Hartman, “Molecular identification and phylogenetic grouping of Diaporthe phaseolorum and Phomopsis longicolla isolates from soybean,” Phytopathology, vol. 88, no. 12, pp. 1306–1314, 1998.
[36]
E. A. Brown, H. C. Minor, and O. H. Calvert, “A soybean genotypes resistant to Phomopsis seed decay,” Crop Science, vol. 27, no. 5, pp. 895–898, 1987.
[37]
L. D. Ploper, T. S. Abney, and K. W. Roy, “Influence of soybean genotype on rate of seed maturation and its impact on seedborne fungi,” Plant Disease, vol. 76, pp. 287–292, 1992.
[38]
H. J. Walters and C. E. Caviness, “Breeding for improved soybean seed quality,” Arkansas Farm Research, vol. 22, article 5, 1973.
[39]
K. L. Athow, “Fungal diseases,” in Soybeans: Improvement, Production, and Uses, J. R. Wlcox, Ed., vol. 16 of Agronomy Monograph, pp. 687–727, ASA, CSSA, and SSSA, Madison, Wis, USA, 2nd edition, 1987.
[40]
J. P. Ross, “Registration of eight soybean germplasm lines resistant to seed infection by Phomopsis spp.,” Crop Science, vol. 26, article 210, 1986.
[41]
H. C. Minor, E. A. Brown, B. L. Doupnik Jr., R. W. Elmore, and M. S. Zimmerman, “Registration of Phomopsis seed decay-resistant soybean germplasm MO/PSD-0259,” Crop Science, vol. 33, no. 5, p. 1105, 1993.
[42]
L. O. Copeland, “Rules for testing seeds,” in Association of Official Seed Analysis, Stone Printing, Lansing, Mich, USA, 1981.
[43]
S. Li, P. Chen, J. Rupe, and A. Wrather, “Reaction of maturity group V soybean plant introductions to Phomopsis seed decay in Arkansas, Mississippi, and Missouri, 2009,” Plant Disease Management Reports, vol. 4, Article ID ST034, 2010.
[44]
S. Li, J. Rupe, P. Chen, and A. Wrather, “Reaction of maturity group IV soybean plant introductions to Phomopsis seed decay in Arkansas, Mississippi, and Missouri, 2009,” Plant Disease Management Reports, vol. 4, Article ID ST035, 2010.
[45]
S. Li, A. Wrather, J. Rupe, and P. Chen, “Reaction of maturity group III soybean plant introductions to Phomopsis seed decay in Arkansas, Mississippi, and Missouri, 2009,” Plant Disease Management Reports, vol. 4, Article ID ST036, 2010.
[46]
S. Li, D. Boykin, G. Sciumbato, A. Wrather, G. Shannon, and D. Sleper, “Reaction of soybean cultivars to Phomopsis seed decay in the Mississippi Delta, 2007,” Plant Disease Management Reports, 2009.
[47]
E. W. Jackson, C. Feng, P. Fenn, and P. Chen, “Genetic mapping of resistance to Phomopsis seed decay in the soybean breeding line MO/PSD-0259 (PI562694) and plant introduction 80837,” Journal of Heredity, vol. 100, no. 6, pp. 777–783, 2009.
[48]
S. Smith, P. Fenn, P. Chen, and E. Jackson, “Inheritance of resistance to Phomopsis seed decay in PI 360841 soybean,” Journal of Heredity, vol. 99, no. 6, pp. 588–592, 2008.
[49]
M. S. Zimmerman and H. C. Minor, “Inheritance of Phomopsis seed decay resistance in soybean PI 417479,” Crop Science, vol. 32, pp. 96–100, 1993.
[50]
G. R. Buss, T. J. Smith, and H. M. Camper, “Registration of Ware soybean cultivar,” Crop Science, vol. 19, article 564, 1979.
[51]
K. W. Roy and T. S. Abney, “Colonization of pods and infection of seeds by Phomopsis longicolla in susceptible and resistant soybean lines inoculated in the greenhouse,” Canadian Journal of Plant Pathology, vol. 10, no. 4, pp. 317–320, 1988.
[52]
J. R. Wilcox, F. A. Laviolette, and R. J. Martin, “Heritability of purple seed stain resistance in soybean,” Crop Science, vol. 15, no. 4, pp. 525–526, 1975.