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Biomolecules  2013 

Protein Stability, Folding and Misfolding in Human PGK1 Deficiency

DOI: 10.3390/biom3041030

Keywords: protein misfolding, protein aggregation, conformational disease, pharmacological therapies, molecular chaperones, thermodynamic stability, kinetic stability, proteolysis

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Abstract:

Conformational diseases are often caused by mutations, altering protein folding and stability in vivo. We review here our recent work on the effects of mutations on the human phosphoglycerate kinase 1 (hPGK1), with a particular focus on thermodynamics and kinetics of protein folding and misfolding. Expression analyses and in vitro biophysical studies indicate that disease-causing mutations enhance protein aggregation propensity. We found a strong correlation among protein aggregation propensity, thermodynamic stability, cooperativity and dynamics. Comparison of folding and unfolding properties with previous reports in PGKs from other species suggests that hPGK1 is very sensitive to mutations leading to enhance protein aggregation through changes in protein folding cooperativity and the structure of the relevant denaturation transition state for aggregation. Overall, we provide a mechanistic framework for protein misfolding of hPGK1, which is insightful to develop new therapeutic strategies aimed to target native state stability and foldability in hPGK1 deficient patients.

References

C) in the phosphoglycerate kinase gene in a Japanese boy with chronic haemolytic anaemia, developmental delay and rhabdomyolysis. Br. J. Haematol. 2003, 122, 1009–1013, doi:10.1046/j.1365-2141.2003.04543.x.
--> C) in the phosphoglycerate kinase gene of a patient with a myopathic form of phosphoglycerate kinase deficiency. J. Child. Neurol. 1998, 13, 95–97, doi:10.1177/088307389801300212.
-->
[1]  Hartl, F.U.; Hayer-Hartl, M. Converging concepts of protein folding in vitro and in vivo. Nat. Struct. Mol. Biol 2009, 16, 574–581, doi:10.1038/nsmb.1591.
[2]  Powers, E.T.; Morimoto, R.I.; Dillin, A.; Kelly, J.W.; Balch, W.E. Biological and chemical approaches to diseases of proteostasis deficiency. Annu. Rev. Biochem. 2009, 78, 959–991, doi:10.1146/annurev.biochem.052308.114844.
[3]  Balch, W.E.; Morimoto, R.I.; Dillin, A.; Kelly, J.W. Adapting proteostasis for disease intervention. Science 2008, 319, 916–919, doi:10.1126/science.1141448.
[4]  Hartl, F.U.; Bracher, A.; Hayer-Hartl, M. Molecular chaperones in protein folding and proteostasis. Nature 2011, 475, 324–332, doi:10.1038/nature10317.
[5]  Gomes, C.M. Protein misfolding in disease and small molecule therapies. Curr. Top. Med. Chem. 2012, 12, 2460–2469, doi:10.2174/1568026611212220002.
[6]  Underhaug, J.; Aubi, O.; Martinez, A. Phenylalanine hydroxylase misfolding and pharmacological chaperones. Curr. Top. Med. Chem. 2012, 12, 2534–2545, doi:10.2174/1568026611212220008.
[7]  Rodrigues, J.V.; Henriques, B.J.; Lucas, T.G.; Gomes, C.M. Cofactors and metabolites as protein folding helpers in metabolic diseases. Curr. Top. Med. Chem. 2012, 12, 2546–2559.
[8]  Ong, D.S.; Kelly, J.W. Chemical and/or biological therapeutic strategies to ameliorate protein misfolding diseases. Curr. Opin. Cell. Biol. 2011, 23, 231–238, doi:10.1016/j.ceb.2010.11.002.
[9]  Beutler, E. PGK deficiency. Br. J. Haematol. 2007, 136, 3–11, doi:10.1111/j.1365-2141.2006.06351.x.
[10]  Willard, H.F.; Goss, S.J.; Holmes, M.T.; Munroe, D.L. Regional localization of the phosphoglycerate kinase gene and pseudogene on the human X chromosome and assignment of a related DNA sequence to chromosome 19. Hum. Genet. 1985, 71, 138–143.
[11]  McCarrey, J.R.; Thomas, K. Human testis-specific PGK gene lacks introns and possesses characteristics of a processed gene. Nature 1987, 326, 501–505, doi:10.1038/326501a0.
[12]  Cliff, M.J.; Bowler, M.W.; Varga, A.; Marston, J.P.; Szabo, J.; Hounslow, A.M.; Baxter, N.J.; Blackburn, G.M.; Vas, M.; Waltho, J.P. Transition state analogue structures of human phosphoglycerate kinase establish the importance of charge balance in catalysis. J. Am. Chem. Soc. 2010, 132, 6507–6516, doi:10.1021/ja100974t.
[13]  Pey, A.L.; Mesa-Torres, N.; Chiarelli, L.R.; Valentini, G. Structural and Energetic Basis of Protein Kinetic Destabilization in Human Phosphoglycerate Kinase 1 Deficiency. Biochemistry 2013, 52, 1160–1170, doi:10.1021/bi301565m.
[14]  Yon, J.M.; Desmadril, M.; Betton, J.M.; Minard, P.; Ballery, N.; Missiakas, D.; Gaillard-Miran, S.; Perahia, D.; Mouawad, L. Flexibility and folding of phosphoglycerate kinase. Biochimie 1990, 72, 417–429, doi:10.1016/0300-9084(90)90066-P.
[15]  Young, T.A.; Skordalakes, E.; Marqusee, S. Comparison of proteolytic susceptibility in phosphoglycerate kinases from yeast and E. coli: Modulation of conformational ensembles without altering structure or stability. J. Mol. Biol. 2007, 368, 1438–1447, doi:10.1016/j.jmb.2007.02.077.
[16]  Grattinger, M.; Dankesreiter, A.; Schurig, H.; Jaenicke, R. Recombinant phosphoglycerate kinase from the hyperthermophilic bacterium Thermotoga maritima: Catalytic, spectral and thermodynamic properties. J. Mol. Biol. 1998, 280, 525–533, doi:10.1006/jmbi.1998.1861.
[17]  Semisotnov, G.V.; Vas, M.; Chemeris, V.V.; Kashparova, N.J.; Kotova, N.V.; Razgulyaev, O.I.; Sinev, M.A. Refolding kinetics of pig muscle and yeast 3-phosphoglycerate kinases and of their proteolytic fragments. Eur J. Biochem. 1991, 202, 1083–1089, doi:10.1111/j.1432-1033.1991.tb16474.x.
[18]  Szilagyi, A.N.; Kotova, N.V.; Semisotnov, G.V.; Vas, M. Incomplete refolding of a fragment of the N-terminal domain of pig muscle 3-phosphoglycerate kinase that lacks a subdomain. Comparison with refolding of the complementary C-terminal fragment. Eur. J. Biochem. 2001, 268, 1851–1860, doi:10.1046/j.1432-1327.2001.02060.x.
[19]  Szilagyi, A.N.; Vas, M. Sequential domain refolding of pig muscle 3-phosphoglycerate kinase: Kinetic analysis of reactivation. Fold. Des. 1998, 3, 565–575, doi:10.1016/S1359-0278(98)00071-6.
[20]  Vas, M.; Sinev, M.A.; Kotova, N.V.; Semisotnov, G.V. Reactivation of 3-phosphoglycerate kinase from its unfolded proteolytic fragments. Eur. J. Biochem. 1990, 189, 575–579, doi:10.1111/j.1432-1033.1990.tb15525.x.
[21]  Galisteo, M.L.; Mateo, P.L.; Sanchez-Ruiz, J.M. Kinetic study on the irreversible thermal denaturation of yeast phosphoglycerate kinase. Biochemistry 1991, 30, 2061–2066, doi:10.1021/bi00222a009.
[22]  Missiakas, D.; Betton, J.M.; Chaffotte, A.; Minard, P.; Yon, J.M. Kinetic studies of the refolding of yeast phosphoglycerate kinase: Comparison with the isolated engineered domains. Protein Sci. 1992, 1, 1485–1493, doi:10.1002/pro.5560011110.
[23]  Sabelko, J.; Ervin, J.; Gruebele, M. Observation of strange kinetics in protein folding. Proc. Natl. Acad. Sci. USA 1999, 96, 6031–6036, doi:10.1073/pnas.96.11.6031.
[24]  Dhar, A.; Ebbinghaus, S.; Shen, Z.; Mishra, T.; Gruebele, M. The diffusion coefficient for PGK folding in eukaryotic cells. Biophys. J. 2010, 99, L69–L71, doi:10.1016/j.bpj.2010.08.066.
[25]  Dhar, A.; Samiotakis, A.; Ebbinghaus, S.; Nienhaus, L.; Homouz, D.; Gruebele, M.; Cheung, M.S. Structure, function, and folding of phosphoglycerate kinase are strongly perturbed by macromolecular crowding. Proc. Natl. Acad. Sci. USA 2010, 107, 17586–17591, doi:10.1073/pnas.1006760107.
[26]  Ebbinghaus, S.; Dhar, A.; McDonald, J.D.; Gruebele, M. Protein folding stability and dynamics imaged in a living cell. Nat. Methods 2010, 7, 319–323, doi:10.1038/nmeth.1435.
[27]  Fermo, E.; Bianchi, P.; Chiarelli, L.R.; Maggi, M.; Mandara, G.M.; Vercellati, C.; Marcello, A.P.; Barcellini, W.; Cortelezzi, A.; Valentini, G.; et al. A new variant of phosphoglycerate kinase deficiency (p.I371K) with multiple tissue involvement: Molecular and functional characterization. Mol. Genet. Metab 2012, 106, 455–461, doi:10.1016/j.ymgme.2012.05.015.
[28]  Sotiriou, E.; Greene, P.; Krishna, S.; Hirano, M.; DiMauro, S. Myopathy and parkinsonism in phosphoglycerate kinase deficiency. Muscle Nerve 2010, 41, 707–710.
[29]  Spiegel, R.; Gomez, E.A.; Akman, H.O.; Krishna, S.; Horovitz, Y.; DiMauro, S. Myopathic form of phosphoglycerate kinase (PGK) deficiency: A new case and pathogenic considerations. Neuromuscul. Disord. 2009, 19, 207–211, doi:10.1016/j.nmd.2008.12.004.
[30]  Morimoto, A.; Ueda, I.; Hirashima, Y.; Sawai, Y.; Usuku, T.; Kano, G.; Kuriyama, K.; Todo, S.; Sugimoto, T.; Kanno, H.; et al. A novel missense mutation (1060G --> C) in the phosphoglycerate kinase gene in a Japanese boy with chronic haemolytic anaemia, developmental delay and rhabdomyolysis. Br. J. Haematol. 2003, 122, 1009–1013, doi:10.1046/j.1365-2141.2003.04543.x.
[31]  Valentine, W.N.; Paglia, D.E. Erythrocyte enzymopathies, hemolytic anemia, and multisystem disease: An annotated review. Blood 1984, 64, 583–591.
[32]  Berardo, A.; DiMauro, S.; Hirano, M. A diagnostic algorithm for metabolic myopathies. Curr. Neurol. Neurosci. Rep. 2010, 10, 118–126, doi:10.1007/s11910-010-0096-4.
[33]  Climent, F.; Roset, F.; Repiso, A.; Perez de la Ossa, P. Red cell glycolytic enzyme disorders caused by mutations: An update. Cardiovasc. Hematol. Disord. Drug Targets 2009, 9, 95–106, doi:10.2174/187152909788488636.
[34]  Parekh, R.; Care, D.A.; Tainter, C.R. Rhabdomyolysis: Advances in diagnosis and treatment. Emerg. Med. Pract. 2012, 14, 1–15. quiz 15.
[35]  Volpi, L.; Ricci, G.; Orsucci, D.; Alessi, R.; Bertolucci, F.; Piazza, S.; Simoncini, C.; Mancuso, M.; Siciliano, G. Metabolic myopathies: Functional evaluation by different exercise testing approaches. Musculoskelet. Surg. 2011, 95, 59–67.
[36]  Flanagan, J.M.; Rhodes, M.; Wilson, M.; Beutler, E. The identification of a recurrent phosphoglycerate kinase mutation associated with chronic haemolytic anaemia and neurological dysfunction in a family from USA. Br. J. Haematol 2006, 134, 233–237, doi:10.1111/j.1365-2141.2006.06143.x.
[37]  Noel, N.; Flanagan, J.M.; Ramirez Bajo, M.J.; Kalko, S.G.; Manu Mdel, M.; Garcia Fuster, J.L.; Perez de la Ossa, P.; Carreras, J.; Beutler, E.; Vives Corrons, J.L. Two new phosphoglycerate kinase mutations associated with chronic haemolytic anaemia and neurological dysfunction in two patients from Spain. Br. J. Haematol. 2006, 132, 523–529.
[38]  Rhodes, M.; Ashford, L.; Manes, B.; Calder, C.; Domm, J.; Frangoul, H. Bone marrow transplantation in phosphoglycerate kinase (PGK) deficiency. Br. J. Haematol. 2011, 152, 500–502, doi:10.1111/j.1365-2141.2010.08474.x.
[39]  Fujii, H.; Miwa, S. Other erythrocyte enzyme deficiencies associated with non-haematological symptoms: Phosphoglycerate kinase and phosphofructokinase deficiency. Baillieres Best Pract. Res. Clin. Haematol. 2000, 13, 141–148, doi:10.1053/beha.1999.0062.
[40]  Maeda, M.; Yoshida, A. Molecular defect of a phosphoglycerate kinase variant (PGK-Matsue) associated with hemolytic anemia: Leu----Pro substitution caused by T/A----C/G transition in exon 3. Blood 1991, 77, 1348–1352.
[41]  Turner, G.; Fletcher, J.; Elber, J.; Yanagawa, Y.; Dave, V.; Yoshida, A. Molecular defect of a phosphoglycerate kinase variant associated with haemolytic anaemia and neurological disorders in a large kindred. Br. J. Haematol. 1995, 91, 60–65, doi:10.1111/j.1365-2141.1995.tb05245.x.
[42]  Michelson, A.M.; Blake, C.C.; Evans, S.T.; Orkin, S.H. Structure of the human phosphoglycerate kinase gene and the intron-mediated evolution and dispersal of the nucleotide-binding domain. Proc. Natl. Acad. Sci. USA 1985, 82, 6965–6969, doi:10.1073/pnas.82.20.6965.
[43]  Kraus, A.P.; Langston, M.F., Jr.; Lynch, B.L. Red cell phosphoglycerate kinase deficiency. A new cause of non-spherocytic hemolytic anemia. Biochem. Biophys. Res. Commun. 1968, 30, 173–177, doi:10.1016/0006-291X(68)90466-X.
[44]  Valentine, W.N. Hereditary hemolytic anemias associated with specific erythrocyte enzymopathies. Calif. Med. 1968, 108, 280–294.
[45]  Chiarelli, L.R.; Morera, S.M.; Bianchi, P.; Fermo, E.; Zanella, A.; Galizzi, A.; Valentini, G. Molecular insights on pathogenic effects of mutations causing phosphoglycerate kinase deficiency. PLoS One 2012, 7, e32065.
[46]  Pey, A.L. The interplay between protein stability and dynamics in conformational diseases: The case of hPGK1 deficiency. Biochim. Biophys. Acta 2013, 1834, 2502–2511, doi:10.1016/j.bbapap.2013.07.011.
[47]  Zieker, D.; Konigsrainer, I.; Weinreich, J.; Beckert, S.; Glatzle, J.; Nieselt, K.; Buhler, S.; Loffler, M.; Gaedcke, J.; Northoff, H.; et al. Phosphoglycerate kinase 1 promoting tumor progression and metastasis in gastric cancer - detected in a tumor mouse model using positron emission tomography/magnetic resonance imaging. Cell. Physiol. Biochem. 2010, 26, 147–154, doi:10.1159/000320545.
[48]  Lay, A.J.; Jiang, X.M.; Kisker, O.; Flynn, E.; Underwood, A.; Condron, R.; Hogg, P.J. Phosphoglycerate kinase acts in tumour angiogenesis as a disulphide reductase. Nature 2000, 408, 869–873, doi:10.1038/35048596.
[49]  Ogino, T.; Iwama, M.; Kinouchi, J.; Shibagaki, Y.; Tsukamoto, T.; Mizumoto, K. Involvement of a cellular glycolytic enzyme, phosphoglycerate kinase, in Sendai virus transcription. J. Biol. Chem. 1999, 274, 35999–36008, doi:10.1074/jbc.274.50.35999.
[50]  Popanda, O.; Fox, G.; Thielmann, H.W. Modulation of DNA polymerases alpha, delta and epsilon by lactate dehydrogenase and 3-phosphoglycerate kinase. Biochim. Biophys. Acta 1998, 1397, 102–117, doi:10.1016/S0167-4781(97)00229-7.
[51]  Myre, M.A.; O'Day, D.H. Calmodulin binds to and inhibits the activity of phosphoglycerate kinase. Biochim. Biophys. Acta 2004, 1693, 177–183, doi:10.1016/j.bbamcr.2004.08.003.
[52]  Gallois-Montbrun, S.; Faraj, A.; Seclaman, E.; Sommadossi, J.P.; Deville-Bonne, D.; Veron, M. Broad specificity of human phosphoglycerate kinase for antiviral nucleoside analogs. Biochem. Pharmacol. 2004, 68, 1749–1756, doi:10.1016/j.bcp.2004.06.012.
[53]  Krishnan, P.; Fu, Q.; Lam, W.; Liou, J.Y.; Dutschman, G.; Cheng, Y.C. Phosphorylation of pyrimidine deoxynucleoside analog diphosphates: Selective phosphorylation of L-nucleoside analog diphosphates by 3-phosphoglycerate kinase. J. Biol. Chem. 2002, 277, 5453–5459, doi:10.1074/jbc.M109025200.
[54]  Mathe, C.; Gosselin, G. L-nucleoside enantiomers as antivirals drugs: A mini-review. Antivir. Res. 2006, 71, 276–281, doi:10.1016/j.antiviral.2006.04.017.
[55]  Gondeau, C.; Chaloin, L.; Lallemand, P.; Roy, B.; Perigaud, C.; Barman, T.; Varga, A.; Vas, M.; Lionne, C.; Arold, S.T. Molecular basis for the lack of enantioselectivity of human 3-phosphoglycerate kinase. Nucleic Acids Res. 2008, 36, 3620–3629, doi:10.1093/nar/gkn212.
[56]  Varga, A.; Chaloin, L.; Sagi, G.; Sendula, R.; Graczer, E.; Liliom, K.; Zavodszky, P.; Lionne, C.; Vas, M. Nucleotide promiscuity of 3-phosphoglycerate kinase is in focus: Implications for the design of better anti-HIV analogues. Mol. Biosyst. 2011, 7, 1863–1873, doi:10.1039/c1mb05051f.
[57]  Varga, A.; Szabo, J.; Flachner, B.; Roy, B.; Konarev, P.; Svergun, D.; Zavodszky, P.; Perigaud, C.; Barman, T.; Lionne, C.; et al. Interaction of human 3-phosphoglycerate kinase with L-ADP, the mirror image of D-ADP. Biochem. Biophys. Res. Commun. 2008, 366, 994–1000, doi:10.1016/j.bbrc.2007.12.061.
[58]  Szilagyi, A.N.; Ghosh, M.; Garman, E.; Vas, M. A 1.8 A resolution structure of pig muscle 3-phosphoglycerate kinase with bound MgADP and 3-phosphoglycerate in open conformation: New insight into the role of the nucleotide in domain closure. J. Mol. Biol. 2001, 306, 499–511, doi:10.1006/jmbi.2000.4294.
[59]  Palmai, Z.; Chaloin, L.; Lionne, C.; Fidy, J.; Perahia, D.; Balog, E. Substrate binding modifies the hinge bending characteristics of human 3-phosphoglycerate kinase: A molecular dynamics study. Proteins 2009, 77, 319–329.
[60]  Vas, M.; Varga, A.; Graczer, E. Insight into the mechanism of domain movements and their role in enzyme function: Example of 3-phosphoglycerate kinase. Curr. Protein Pept. Sci. 2010, 11, 118–147, doi:10.2174/138920310790848403.
[61]  Ritco-Vonsovici, M.; Mouratou, B.; Minard, P.; Desmadril, M.; Yon, J.M.; Andrieux, M.; Leroy, E.; Guittet, E. Role of the C-terminal helix in the folding and stability of yeast phosphoglycerate kinase. Biochemistry 1995, 34, 833–841, doi:10.1021/bi00003a017.
[62]  Varga, A.; Flachner, B.; Graczer, E.; Osvath, S.; Szilagyi, A.N.; Vas, M. Correlation between conformational stability of the ternary enzyme-substrate complex and domain closure of 3-phosphoglycerate kinase. FEBS J. 2005, 272, 1867–1885, doi:10.1111/j.1742-4658.2005.04618.x.
[63]  Kiefhaber, T.; Schmid, F.X. Kinetic coupling between protein folding and prolyl isomerization. II. Folding of ribonuclease A and ribonuclease T1. J. Mol. Biol. 1992, 224, 217–229, doi:10.1016/0022-2836(92)90585-8.
[64]  Schmid, F.X.; Grafl, R.; Wrba, A.; Beintema, J.J. Role of proline peptide bond isomerization in unfolding and refolding of ribonuclease. Proc. Natl. Acad. Sci. USA 1986, 83, 872–876, doi:10.1073/pnas.83.4.872.
[65]  Fujii, H.; Kanno, H.; Hirono, A.; Shiomura, T.; Miwa, S. A single amino acid substitution (157 Gly----Val) in a phosphoglycerate kinase variant (PGK Shizuoka) associated with chronic hemolysis and myoglobinuria. Blood 1992, 79, 1582–1585.
[66]  Cohen-Solal, M.; Valentin, C.; Plassa, F.; Guillemin, G.; Danze, F.; Jaisson, F.; Rosa, R. Identification of new mutations in two phosphoglycerate kinase (PGK) variants expressing different clinical syndromes: PGK Creteil and PGK Amiens. Blood 1994, 84, 898–903.
[67]  Hjelm, M.; Wadam, B.; Yoshida, A. A phosphoglycerate kinase variant, PGK Uppsala, associated with hemolytic anemia. J. Lab. Clin. Med. 1980, 96, 1015–1021.
[68]  Fujii, H.; Yoshida, A. Molecular abnormality of phosphoglycerate kinase-Uppsala associated with chronic nonspherocytic hemolytic anemia. Proc. Natl. Acad. Sci. USA 1980, 77, 5461–5465, doi:10.1073/pnas.77.9.5461.
[69]  Ookawara, T.; Dave, V.; Willems, P.; Martin, J.J.; de Barsy, T.; Matthys, E.; Yoshida, A. Retarded and aberrant splicings caused by single exon mutation in a phosphoglycerate kinase variant. Arch. Biochem. Biophys. 1996, 327, 35–40, doi:10.1006/abbi.1996.0089.
[70]  Sugie, H.; Sugie, Y.; Ito, M.; Fukuda, T. A novel missense mutation (837T-->C) in the phosphoglycerate kinase gene of a patient with a myopathic form of phosphoglycerate kinase deficiency. J. Child. Neurol. 1998, 13, 95–97, doi:10.1177/088307389801300212.
[71]  Fujii, H.; Chen, S.H.; Akatsuka, J.; Miwa, S.; Yoshida, A. Use of cultured lymphoblastoid cells for the study of abnormal enzymes: Molecular abnormality of a phosphoglycerate kinase variant associated with hemolytic anemia. Proc. Natl. Acad. Sci. USA 1981, 78, 2587–2590, doi:10.1073/pnas.78.4.2587.
[72]  Valentin, C.; Birgens, H.; Craescu, C.T.; Brodum-Nielsen, K.; Cohen-Solal, M. A phosphoglycerate kinase mutant (PGK Herlev; D285V) in a Danish patient with isolated chronic hemolytic anemia: Mechanism of mutation and structure-function relationships. Hum. Mutat. 1998, 12, 280–287, doi:10.1002/(SICI)1098-1004(1998)12:4<280::AID-HUMU10>3.0.CO;2-V.
[73]  Maeda, M.; Bawle, E.V.; Kulkarni, R.; Beutler, E.; Yoshida, A. Molecular abnormalities of a phosphoglycerate kinase variant generated by spontaneous mutation. Blood 1992, 79, 2759–2762.
[74]  Tsujino, S.; Tonin, P.; Shanske, S.; Nohria, V.; Boustany, R.M.; Lewis, D.; Chen, Y.T.; DiMauro, S. A splice junction mutation in a new myopathic variant of phosphoglycerate kinase deficiency (PGK North Carolina). Ann. Neurol. 1994, 35, 349–353, doi:10.1002/ana.410350316.
[75]  Hamano, T.; Mutoh, T.; Sugie, H.; Koga, H.; Kuriyama, M. Phosphoglycerate kinase deficiency: An adult myopathic form with a novel mutation. Neurology 2000, 54, 1188–1190, doi:10.1212/WNL.54.5.1188.
[76]  Aasly, J.; van Diggelen, O.P.; Boer, A.M.; Bronstad, G. Phosphoglycerate kinase deficiency in two brothers with McArdle-like clinical symptoms. Eur. J. Neurol. 2000, 7, 111–113, doi:10.1046/j.1468-1331.2000.00012.x.
[77]  Svaasand, E.K.; Aasly, J.; Landsem, V.M.; Klungland, H. Altered expression of PGK1 in a family with phosphoglycerate kinase deficiency. Muscle Nerve 2007, 36, 679–684, doi:10.1002/mus.20859.
[78]  Shirakawa, K.; Takahashi, Y.; Miyajima, H. Intronic mutation in the PGK1 gene may cause recurrent myoglobinuria by aberrant splicing. Neurology 2006, 66, 925–927, doi:10.1212/01.wnl.0000203500.63884.39.
[79]  Mesa-Torres, N.; Fabelo-Rosa, I.; Riverol, D.; Yunta, C.; Albert, A.; Salido, E.; Pey, A.L. The role of protein denaturation energetics and molecular chaperones in the aggregation and mistargeting of mutants causing primary hyperoxaluria type I. PLoS One 2013, 8, e71963.
[80]  Pey, A.L.; Desviat, L.R.; Gamez, A.; Ugarte, M.; Perez, B. Phenylketonuria: Genotype-phenotype correlations based on expression analysis of structural and functional mutations in PAH. Hum. Mutat. 2003, 21, 370–378, doi:10.1002/humu.10198.
[81]  Henriques, B.J.; Bross, P.; Gomes, C.M. Mutational hotspots in electron transfer flavoprotein underlie defective folding and function in multiple acyl-CoA dehydrogenase deficiency. Biochim. Biophys. Acta 2010, 1802, 1070–1077, doi:10.1016/j.bbadis.2010.07.015.
[82]  Majtan, T.; Liu, L.; Carpenter, J.F.; Kraus, J.P. Rescue of cystathionine beta-synthase (CBS) mutants with chemical chaperones: Purification and characterization of eight CBS mutant enzymes. J. Biol. Chem. 2010, 285, 15866–15873, doi:10.1074/jbc.M110.107722.
[83]  Pey, A.L.; Salido, E.; Sanchez-Ruiz, J.M. Role of low native state kinetic stability and interaction of partially unfolded states with molecular chaperones in the mitochondrial protein mistargeting associated with primary hyperoxaluria. Amino Acids 2011, 41, 1233–1245, doi:10.1007/s00726-010-0801-2.
[84]  Sanchez-Ruiz, J.M.; Lopez-Lacomba, J.L.; Cortijo, M.; Mateo, P.L. Differential scanning calorimetry of the irreversible thermal denaturation of thermolysin. Biochemistry 1988, 27, 1648–1652, doi:10.1021/bi00405a039.
[85]  Matouschek, A.; Fersht, A.R. Application of physical organic chemistry to engineered mutants of proteins: Hammond postulate behavior in the transition state of protein folding. Proc. Natl. Acad. Sci. USA 1993, 90, 7814–7818, doi:10.1073/pnas.90.16.7814.
[86]  Costas, M.; Rodriguez-Larrea, D.; de Maria, L.; Borchert, T.V.; Gomez-Puyou, A.; Sanchez-Ruiz, J.M. Between-species variation in the kinetic stability of TIM proteins linked to solvation-barrier free energies. J. Mol. Biol. 2009, 385, 924–937, doi:10.1016/j.jmb.2008.10.056.
[87]  Rodriguez-Larrea, D.; Minning, S.; Borchert, T.V.; Sanchez-Ruiz, J.M. Role of solvation barriers in protein kinetic stability. J. Mol. Biol. 2006, 360, 715–724, doi:10.1016/j.jmb.2006.05.009.
[88]  Aguirre, Y.; Cabrera, N.; Aguirre, B.; Perez-Montfort, R.; Hernandez-Santoyo, A.; Reyes-Vivas, H.; Enriquez-Flores, S.; de Gomez-Puyou, M.T.; Gomez-Puyou, A.; Sanchez-Ruiz, J.M.; et al. Different contribution of conserved amino acids to the global properties of Triosephosphate isomerases. Proteins 2013, doi:10.10002/prot.24398.
[89]  Plaza del Pino, I.M.; Ibarra-Molero, B.; Sanchez-Ruiz, J.M. Lower kinetic limit to protein thermal stability: A proposal regarding protein stability in vivo and its relation with misfolding diseases. Proteins 2000, 40, 58–70, doi:10.1002/(SICI)1097-0134(20000701)40:1<58::AID-PROT80>3.0.CO;2-M.
[90]  Park, C.; Marqusee, S. Probing the high energy states in proteins by proteolysis. J. Mol. Biol. 2004, 343, 1467–1476, doi:10.1016/j.jmb.2004.08.085.
[91]  Tur-Arlandis, G.; Rodriguez-Larrea, D.; Ibarra-Molero, B.; Sanchez-Ruiz, J.M. Proteolytic scanning calorimetry: A novel methodology that probes the fundamental features of protein kinetic stability. Biophys. J. 2010, 98, L12–L14, doi:10.1016/j.bpj.2009.11.028.
[92]  Myers, J.K.; Pace, C.N.; Scholtz, J.M. Denaturant m values and heat capacity changes: Relation to changes in accessible surface areas of protein unfolding. Protein Sci. 1995, 4, 2138–2148, doi:10.1002/pro.5560041020.
[93]  Whitten, S.T.; Wooll, J.O.; Razeghifard, R.; Garcia-Moreno, E.B.; Hilser, V.J. The origin of pH-dependent changes in m-values for the denaturant-induced unfolding of proteins. J. Mol. Biol. 2001, 309, 1165–1175, doi:10.1006/jmbi.2001.4726.
[94]  Pey, A.L.; Majtan, T.; Sanchez-Ruiz, J.M.; Kraus, J.P. Human cystathionine beta-synthase (CBS) contains two classes of binding sites for S-adenosylmethionine (SAM): Complex regulation of CBS activity and stability by SAM. Biochem. J. 2013, 449, 109–121, doi:10.1042/BJ20120731.
[95]  Ruzafa, D.; Conejero-Lara, F.; Morel, B. Modulation of the stability of amyloidogenic precursors by anion binding strongly influences the rate of amyloid nucleation. Phys. Chem. Chem. Phys. 2013, 15, 15508–15517, doi:10.1039/c3cp52313f.
[96]  Sanchez-Romero, I.; Ariza, A.; Wilson, K.S.; Skjot, M.; Vind, J.; de Maria, L.; Skov, L.K.; Sanchez-Ruiz, J.M. Mechanism of protein kinetic stabilization by engineered disulfide crosslinks. PLoS One 2013, 8, e70013, doi:10.1371/journal.pone.0070013.
[97]  Kerner, M.J.; Naylor, D.J.; Ishihama, Y.; Maier, T.; Chang, H.C.; Stines, A.P.; Georgopoulos, C.; Frishman, D.; Hayer-Hartl, M.; Mann, M.; et al. Proteome-wide analysis of chaperonin-dependent protein folding in Escherichia coli. Cell 2005, 122, 209–220, doi:10.1016/j.cell.2005.05.028.
[98]  Kim, Y.E.; Hipp, M.S.; Bracher, A.; Hayer-Hartl, M.; Hartl, F.U. Molecular chaperone functions in protein folding and proteostasis. Annu. Rev. Biochem. 2013, 82, 323–355, doi:10.1146/annurev-biochem-060208-092442.
[99]  Dhar, A.; Girdhar, K.; Singh, D.; Gelman, H.; Ebbinghaus, S.; Gruebele, M. Protein stability and folding kinetics in the nucleus and endoplasmic reticulum of eucaryotic cells. Biophys. J. 2011, 101, 421–430, doi:10.1016/j.bpj.2011.05.071.
[100]  Ellis, R.J.; Minton, A.P. Protein aggregation in crowded environments. Biol. Chem. 2006, 387, 485–497.
[101]  Banks, R.D.; Blake, C.C.; Evans, P.R.; Haser, R.; Rice, D.W.; Hardy, G.W.; Merrett, M.; Phillips, A.W. Sequence, structure and activity of phosphoglycerate kinase: A possible hinge-bending enzyme. Nature 1979, 279, 773–777, doi:10.1038/279773a0.
[102]  Casanueva, M.O.; Burga, A.; Lehner, B. Fitness trade-offs and environmentally induced mutation buffering in isogenic C. elegans. Science 2012, 335, 82–85, doi:10.1126/science.1213491.
[103]  Sancho, J.; Meiering, E.M.; Fersht, A.R. Mapping transition states of protein unfolding by protein engineering of ligand-binding sites. J. Mol. Biol. 1991, 221, 1007–1014, doi:10.1016/0022-2836(91)80188-Z.
[104]  Calamini, B.; Silva, M.C.; Madoux, F.; Hutt, D.M.; Khanna, S.; Chalfant, M.A.; Saldanha, S.A.; Hodder, P.; Tait, B.D.; Garza, D.; et al. Small-molecule proteostasis regulators for protein conformational diseases. Nat. Chem. Biol. 2011, 8, 185–196.

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