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菌物学报  2015 

美味牛肝菌全基因组SSR位点的分布规律研究

DOI: DOI:10.13346/j.mycosystema.140020, PP. 204-214

Keywords: 美味牛肝菌,SSR分子标记,分布规律

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Abstract:

研究利用生物信息学方法对美味牛肝菌全基因组中的SSR位点进行了统计分析,并与其他3种担子菌基因组(灰盖鬼伞、裂褶菌、糙皮侧耳)进行了比较。结果表明,在美味牛肝菌基因组中存在2732个SSR位点,SSR间的平均距离为17.1kb。73.02%的SSR位点分布在基因组中的非编码区,并以单核苷酸和三核苷酸重复类型为主。分布于5¢或3¢非编译区的SSR的相对丰度最高,为86个/Mb,而分布于编码序列的SSR相对丰度最低,为31个/Mb。同时,高通量筛选出41个长SSR位点设计引物并通过e-PCR进行了验证。最后通过与其他3种担子菌基因组相比,发现SSR数量与基因组大小无关,SSR类型都以短重复类型(单核苷酸至三核苷酸)为主,比较发现美味牛肝菌基因组中的SSR位点数量相对较多,密度也较高。

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