[1] | Valko M, Morris H, Cronin MT (2005) Metals, toxicity and oxidative stress. Curr Med Chem 12: 1161–1208. pmid:15892631 doi: 10.2174/0929867053764635
|
[2] | Waldron K, Rutherford J, Ford D, Robinson N (2009) Metalloproteins and metal sensing. Nature 460: 823–830. doi: 10.1038/nature08300. pmid:19675642
|
[3] | Hosiner D, Gerber S, Lichtenberg-Frate H, Glaser W, Schuller C, et al. (2014) Impact of Acute Metal Stress in Saccharomyces cerevisiae. PLoS One 9: e83330. doi: 10.1371/journal.pone.0083330. pmid:24416162
|
[4] | Eide DJ (2001) Functional genomics and metal metabolism. Genome Biology 2: 1028.1021–1028.1023.
|
[5] | Sychrova H (2004) Yeast as a model organism to study transport and homeostasis of alkali metal cations. Physiol Res 53: 91–98.
|
[6] | Ari?o J, Ramos J, Sychrova H (2010) Alkali metal cation transport and homeostasis in yeasts. Microbiol Mol Biol Rev 74: 95–120. doi: 10.1128/MMBR.00042-09. pmid:20197501
|
[7] | Cyert MS, Philpott CC (2013) Regulation of cation balance in Saccharomyces cerevisiae. Genetics 193: 677–713. doi: 10.1534/genetics.112.147207. pmid:23463800
|
[8] | Kahm M, Navarrete C, Llopis-Torregrosa V, Herrera R, Barreto L, et al. (2012) Potassium starvation in yeast: mechanisms of homeostasis revealed by mathematical modeling. PLoS Comput Biol 8: e1002548. doi: 10.1371/journal.pcbi.1002548. pmid:22737060
|
[9] | Arino J, Aydar E, Drulhe S, Ganser D, Jorrin J, et al. (2014) Systems biology of monovalent cation homeostasis in yeast: the translucent contribution. Adv Microb Physiol 64: 1–63. doi: 10.1016/B978-0-12-800143-1.00001-4. pmid:24797924
|
[10] | Cornett CR, Markesbery WR, Ehmann WD (1998) Imbalances of trace elements related to oxidative damage in Alzheimer's disease brain. Neurotoxicology 19: 339–345. pmid:9621340
|
[11] | Blackwell KJ, Tobin JM, Avery SV (1998) Manganese toxicity towards Saccharomyces cerevisiae: dependence on intracellular and extracellular magnesium concentrations. Appl Microbiol Biotechnol 49: 751–757. pmid:9684308 doi: 10.1007/s002530051242
|
[12] | Rodriguez-Navarro A (2000) Potassium transport in fungi and plants. Biochim Biophys Acta 1469: 1–30. pmid:10692635 doi: 10.1016/s0304-4157(99)00013-1
|
[13] | Jennings D (1995) The physiology of fungal nutrition: Cambridge University Press.
|
[14] | Rothstein A (1964) The cellular functions of membrane transport. Prentice-Hall, Englewood Cliffs, N. pp. 23–39.
|
[15] | Tosteson DC (1964) Regulation of cell volume by sodium and potassium transport. Prentice-Hall, Englewood Cliffs, N. pp. 3–22.
|
[16] | Serrano R, Rodriguez-Navarro A (2001) Ion homeostasis during salt stress in plants. Curr Opin Cell Biol 13: 399–404. pmid:11454443 doi: 10.1016/s0955-0674(00)00227-1
|
[17] | Gasch A, Spellman P (2000) Genomic expression programs in the response of yeast cells to environmental changes. Mol Cell Biol 11: 4241–4257. doi: 10.1091/mbc.11.12.4241
|
[18] | Cronin J (1981) Mathematics of Cell Electrophysiology—Lecture Notes in pure and applied mathematics -volume 63: Marcel Dekker.
|
[19] | Keener J, Sneyd J (1998) Mathematical Physiology: Springer.
|
[20] | Dinno A (1988) Membrane Biophysics: Biological Transport (Progress in Clinical & Biological Research): A.R.Liss,N.Y.
|
[21] | Stein WD (1990) Channels, Carriers, and Pumps: An Introduction to Membrane Transport: Academic Press.
|
[22] | Stein WD (1986) Transport and Diffusion Across Cell Membranes: Academic Press.
|
[23] | Gradmann D, Klieber HG, Hansen UP (1987) Reaction kinetic parameters for ion transport from steady-state current-voltage curves. Biophys J 51: 569–585. pmid:2437973 doi: 10.1016/s0006-3495(87)83382-9
|
[24] | Garcia GJ, Boucher RC, Elston TC (2013) Biophysical model of ion transport across human respiratory epithelia allows quantification of ion permeabilities. Biophys J 104: 716–726. doi: 10.1016/j.bpj.2012.12.040. pmid:23442922
|
[25] | Wang Y, Papanatsiou M, Eisenach C, Karnik R, Williams M, et al. (2012) Systems dynamic modeling of a guard cell Cl- channel mutant uncovers an emergent homeostatic network regulating stomatal transpiration. Plant Physiol 160: 1956–1967. doi: 10.1104/pp.112.207704. pmid:23090586
|
[26] | Gradmann D (2001) Impact of apoplast volume on ionic relations in plant cells. J Membr Biol 184: 61–69. pmid:11687879 doi: 10.1007/s00232-001-0074-5
|
[27] | Gradmann D, Blatt MR, Thiel G (1993) Electrocoupling of ion transporters in plants. J Membr Biol 136: 327–332. pmid:8114082 doi: 10.1007/bf00233671
|
[28] | Gradmann D, Hoffstadt J (1998) Electrocoupling of ion transporters in plants: interaction with internal ion concentrations. J Membr Biol 166: 51–59. pmid:9784585 doi: 10.1007/s002329900446
|
[29] | Katzir-Katchalsky A, Curran PF (1965) Nonequilibrium thermodynamics in biophysics. Cambridge,: Harvard University Press. x, 248 p. p.
|
[30] | Katchalsky A, Spangler R (1968) Dynamics of membrane processes. Q Rev Biophys 1: 127–175. pmid:4884849 doi: 10.1017/s0033583500000524
|
[31] | Onsager L (1931) Reciprocal Relations in Irreversible Processes I. Phys Rev 37: 405–426. doi: 10.1103/physrev.37.405
|
[32] | Onsager L (1931) Reciprocal Relations in Irreversible Processes II. Phys Rev 38: 2265–2279. doi: 10.1103/physrev.38.2265
|
[33] | Blatt M, CL. S (1987) Role of "active" potassium transport in the regulation of cytoplasmic pH by nonanimal cells. Proc Natl Acad Sci U S A 84: 2737–2741. pmid:3472234 doi: 10.1073/pnas.84.9.2737
|
[34] | Katchalsky A, Curran P (1965) Nonequilibrium Thermodynamics in Biophysics: Harvard Univ. Press.
|
[35] | Lecchi S, Allen KE, Pardo JP, Mason AB, Slayman CW (2005) Conformational changes of yeast plasma membrane H(+)-ATPase during activation by glucose: role of threonine-912 in the carboxy-terminal tail. Biochemistry Easton 44: 16624–16632. doi: 10.1021/bi051555f
|
[36] | Lecchi S, Nelson CJ, Slayman CW (2007) Tandem phosphorylation of Ser-911 and Thr-912 at the C terminus of yeast plasma membrane H+-ATPase leads to glucose-dependent activation. J Biol Chem 282: 35471. pmid:17932035 doi: 10.1074/jbc.m706094200
|
[37] | Keener J, Sneyd J (1998) Mathematical Physiology; Marsden JE, Sirovich L, Wiggins S, editors. New York: Springer.
|
[38] | Rapoport SI (1970) The sodium-potassium exchange pump: relation of metabolism to electrical properties of the cell. I. Theory. Biophys J 10: 246–259. pmid:5434647 doi: 10.1016/s0006-3495(70)86297-x
|
[39] | Waldeck AR, van Dam K, Berden J, Kuchel PW (1998) A non-equilibrium thermodynamics model of reconstituted Ca(2+)-ATPase. Eur Biophys J 27: 255–262. pmid:9615397 doi: 10.1007/s002490050132
|
[40] | Hill TL (1983) Derivation of the relation between the linear Onsager coefficients and the equilibrium one-way cycle fluxes of a biochemical kinetic diagram. Proc Natl Acad Sci U S A 80: 2589–2590. pmid:16593306 doi: 10.1073/pnas.80.9.2589
|
[41] | Rivetta A, Slayman C, Kuroda T (2005) Quantitative Modeling of Chloride Conductance in Yeast TRK Potassium Transporters. Biophysical Journal 89: 2412–2426. pmid:16040756 doi: 10.1529/biophysj.105.066712
|
[42] | Goodman J, Rothstein A (1957) The Active Transport of Phosphate into the Yeast Cell. Journal of General Physiology 40: 915–923. pmid:13439168 doi: 10.1085/jgp.40.6.915
|
[43] | Canadell D, Gonzalez A, Casado C, Arino J (2015) Functional interactions between potassium and phosphate homeostasis in Saccharomyces cerevisiae. Molecular Microbiology 95: 555–572. doi: 10.1111/mmi.12886. pmid:25425491
|
[44] | Serra-Cardona A, Petrezselyova S, Canadell D, Ramos J, Arino J (2014) Coregulated Expression of the Na+/Phosphate Pho89 Transporter and Ena1 Na+-ATPase Allows Their Functional Coupling under High-pH Stress. Molecular and Cellular Biology 34: 4420–4435. doi: 10.1128/MCB.01089-14. pmid:25266663
|
[45] | Rapoport SI (1970) The sodium-potassium exchange pump: relation of metabolism to electrical properties of the cell. Biophysical Journal 10: 246–259. pmid:5434647 doi: 10.1016/s0006-3495(70)86297-x
|
[46] | Waldeck ARvD, K.; Berden J.; Kuchel P. W. (1998) A non-equilibrium thermodynamics model of reconstituted Ca(2+)-ATPase. European biophysics journal: EBJ 27: 255–262. pmid:9615397 doi: 10.1007/s002490050132
|
[47] | Cagnac O, Leterrier M, Yeager M, Blumwald E (2007) Identification and characterization of Vnx1p, a novel type of vacuolar monovalent cation/H+ antiporter of Saccharomyces cerevisiae. J Biol Chem 282: 24284–24293. pmid:17588950 doi: 10.1074/jbc.m703116200
|
[48] | Qiu QS, Fratti RA (2010) The Na+/H+ exchanger Nhx1p regulates the initiation of Saccharomyces cerevisiae vacuole fusion. J Cell Sci 123: 3266–3275. doi: 10.1242/jcs.067637. pmid:20826459
|
[49] | Maresova L, Sychrova H (2005) Physiological characterization of Saccharomyces cerevisiae kha1 deletion mutants. Mol Microbiol 55: 588–600. pmid:15659172 doi: 10.1111/j.1365-2958.2004.04410.x
|
[50] | Jakobsson E (1980) Interactions of cell volume, membrane potential and membrane transport parameters. Am J Physiol 238: C196–C206. pmid:7377338
|
[51] | Lemieux DR, Roberge FA, Joly D (1992) Modeling the dynamic features of the electrogenic Na,K pump of cardiac cells. Journal of Theoretical Biology 154: 335–358. pmid:1317487 doi: 10.1016/s0022-5193(05)80175-4
|
[52] | Strieter J, Stephenson J, Palmer L, Weinstein A (1990) Volume-activated chloride permeability can mediate cell volume regulation in a mathematical model of a tight epithelium. J Gen Physiol 96: 319–344. pmid:2212984 doi: 10.1085/jgp.96.2.319
|
[53] | Hernandez J, Cristina E (1998) Modeling cell volume regulation in nonexcitable cells: the roles of the Na+ pump and of cotransport systems. Am J Physiol Cell Physiol 275: 1067–1080.
|
[54] | Tosteson DC, Hoffman JF (1960) Regulation of Cell Volume by Active Cation Transport in High and Low Potassium Sheep Red Cells. J Gen Physiol 44: 169–194. pmid:13777653 doi: 10.1085/jgp.44.1.169
|
[55] | Rep M, Reiser V, Gartner U, Thevelein J, Hohmann S, et al. (1999) Osmotic Stress-Induced Gene Expression in Saccharomyces cerevisiae Requires Msn1p and the Novel Nuclear Factor Hot1. Molecular and Cellular Biology 19: 5474–5548. pmid:10409737 doi: 10.1128/mcb.19.8.5474
|
[56] | Van Wuytswinkel O, Reiser V, Siderius M, Kelders M, Ammerer G, et al. (2000) Response of Saccharomyces cerevisiae to severe osmotic stress: evidence for a novel activation mechanism of the HOG MAP kinase pathway. Mol Microbiol 37: 382–397. pmid:10931333 doi: 10.1046/j.1365-2958.2000.02002.x
|
[57] | Rep M, Krantz M, Thevelein JM, Hohmann S (2000) The Transcriptional Response of Saccharomyces cerevisiae to Osmotic Shock. Journal of Biological Chemistry 275: 8290–8300. pmid:10722658 doi: 10.1074/jbc.275.12.8290
|
[58] | Schaber J, Baltanas R, Bush A, Klipp E, Colman-Lerner A (2012) Modelling reveals novel roles of two parallel signalling pathways and homeostatic feedbacks in yeast. Mol Syst Biol 8: 622. doi: 10.1038/msb.2012.53. pmid:23149687
|
[59] | Klipp E, Nordlander B, Kr?ger R, Gennemark P, Hohmann S (2005) Integrative model of the response of yeast to osmotic shock. Nat Biotechnol 23: 975–982. pmid:16025103 doi: 10.1038/nbt1114
|
[60] | Zi Z, Liebermeister W, Klipp E (2010) A quantitative study of the Hog1 MAPK response to fluctuating osmotic stress in Saccharomyces cerevisiae. PLoS One 5: e9522. doi: 10.1371/journal.pone.0009522. pmid:20209100
|
[61] | Schaber J, Adrover MA, Eriksson E, Pelet S, Petelenz-Kurdziel E, et al. (2010) Biophysical properties of Saccharomyces cerevisiae and their relationship with HOG pathway activation. Eur Biophys J 11: 1547–1556. doi: 10.1007/s00249-010-0612-0
|
[62] | Shabala L, Ross T, McMeekin T, Shabala S (2006) Non-invasive microelectrode ion flux measurements to study adaptive responses of microorganisms to the environment. FEMS Microbiol Rev 30: 472–486. pmid:16594966 doi: 10.1111/j.1574-6976.2006.00019.x
|
[63] | Shabala L, Bowman J, Brown J, Ross T, McMeekin T, et al. (2009) Ion transport and osmotic adjustment in Escherichia coli in response to ionic and non-ionic osmotica. Environ Microbiol 11: 137–148. doi: 10.1111/j.1462-2920.2008.01748.x. pmid:18793315
|
[64] | Sherman F (2002) Getting started with yeast. Methods Enzymol 350: 3–41. pmid:12073320 doi: 10.1016/s0076-6879(02)50954-x
|
[65] | ?zalp V, Pedersen T, Nielsen L, Olsen L (2010) Time-resolved measurements of intracellular ATP in the yeast Saccharomyces cerevisiae using a new type of nanobiosensor. J Biol Chem 26: 37579–37588. doi: 10.1074/jbc.m110.155119
|
[66] | Hoops S, Sahle S, Gauges R, Lee C, Pahle J, et al. (2006) COPASI—a COmplex PAthway SImulator. Bioinformatics 83: 3067–3074. doi: 10.1093/bioinformatics/btl485
|
[67] | Kennedy J, Eberhart R. Particle swarm optimization; 1995. pp. 1942–1948. doi: 10.1109/icnn.1995.488968
|
[68] | Matsumoto M, Nishimura T (1998) Mersenne twister: A 623-dimensionally equidistributed uniform pseudorandom number generator. ACM Transactions on Modeling and Computer Simulation 8: 3–30. doi: 10.1145/272991.272995
|
[69] | Petzold L (1983) Automatic Selection of Methods for Solving Stiff and Nonstiff Systems of Ordinary Differential Equations. SIAM Journal on Scientific and Statistical Computing 4: 136–148. doi: 10.1137/0904010
|