全部 标题 作者
关键词 摘要

OALib Journal期刊
ISSN: 2333-9721
费用:99美元

查看量下载量

相关文章

更多...

烟草DNA序列分组测量可视化分析
The Visual Analysis of Packet Measurement about Tobacco DNA Sequence

DOI: 10.12677/HJCB.2019.92003, PP. 14-21

Keywords: 烟草DNA,可视化,变值图
Tobacco DNA
, Visualization, Variable Map

Full-Text   Cite this paper   Add to My Lib

Abstract:

随着基因工程技术的发展,基因数据库也在不断扩大,DNA数据的处理研究的方法也在不断改进。本文则是利用变值图技术,将复杂的烟草DNA数据投射成可视化的图,并且对数据使用不同的分段分别进行投射。这些分析和展示的结果为深入烟草基因组研究提供了参考。
With the development of genetic engineering technology, the gene database is expanding, and the methods of DNA data processing are improving. In this paper, the complex tobacco DNA data are projected into a visualized graph by using the variable map technique. And the data are projected separately using different segments. These results provide a reference for further tobacco genome research.

References

[1]  Berger, J.A., Mitra, S.K., Carli, M. and Neri, A. (2004) Visualization and Analysis of DNA Sequences Using DNA Walks. Journal of the Franklin Institute, 341, 37-53.
https://doi.org/10.1016/j.jfranklin.2003.12.002
[2]  Pitt, J.N., Rajapakse, I. and Ferre-D’Amare, A.R. (2010) SEWAL: An Open-Source Platform for Next-Generation Sequence Analysis and Visualization. PMC, 38, 7908-7915.
https://doi.org/10.1093/nar/gkq661
[3]  Bernstein, B.E., Birney, E., Dunham, I., et al. (2012) An Integrated Encyclopedia of DNA Elements in the Human Genome. Nature, 489, 57-74.
https://doi.org/10.1038/nature11247
[4]  Pennisi, E. (2012) Genomics. ENCODE Project Writes Eulogy for Junk DNA. Science, 337, 1159-1161.
https://doi.org/10.1126/science.337.6099.1159
[5]  Li, Q.P. and Zheng, Z.J. (2010) Spatial Distributions for Measures of Random Sequences Using 2D Conjugate Maps. Proceedings of Asia-Pacific Youth Conference on Com-munication, Kunming, 64-69.
[6]  张巍琼, 郑智捷. 基于不同产生机制的伪随机序列和DNA序列的随机性测量[J]. 成都信息工程学院学报, 2012, 27(6): 548-555.
[7]  刘玉倩, 郑智捷. 编码和非编码DNA序列的可视化分析[J]. 计算生物学, 2014, 4(2): 20-31.
[8]  完竹, 郑智捷. DNA序列一维分段测量分布可视化[J]. 云南大学学报(自然科学版), 2013(35): 1-6.
[9]  杜磊, 郑智捷. 在非线性函数下的DNA概率测量聚类分布[J]. 软件工程与应用, 2014, 3(3): 41-49.
[10]  李彦平, 丁燕芳, 孙焕, 李雪君, 朱景伟, 段旺军, 马浩波, 郭芳阳. 我国烟草育种现状及思考[J]. 河南农业科学, 2010(9): 148-150+156.
[11]  
http://plants.ensembl.org/Nicotiana_attenuata/Info/Index
[12]  Xu, S., Brockm?ller, T., Na-varro-Quezada, A., et al. (2017) Wild Tobacco Genomes Reveal the Evolution of Nicotine Biosynthesis. Proceedings of the National Academy of Sciences, 114, 6133-6138.
https://doi.org/10.1073/pnas.1700073114

Full-Text

Contact Us

[email protected]

QQ:3279437679

WhatsApp +8615387084133