全部 标题 作者
关键词 摘要

OALib Journal期刊
ISSN: 2333-9721
费用:99美元

查看量下载量

相关文章

更多...

Decipher Clinical and Genetic Underpins of Breast Cancer Survival with Machine Learning Methods

DOI: 10.4236/abcr.2023.124013, PP. 163-185

Keywords: Machine Learning, Breast Cancer Prediction, Data Analysis, Feature Importance Comparison

Full-Text   Cite this paper   Add to My Lib

Abstract:

Breast cancer is one of the most common cancers among women in the world, with more than two million new cases of breast cancer every year. This disease is associated with numerous clinical and genetic characteristics. In recent years, machine learning technology has been increasingly applied to the medical field, including predicting the risk of malignant tumors such as breast cancer. Based on clinical and targeted sequencing data of 1980 primary breast cancer samples, this article aimed to analyze these data and predict living conditions after breast cancer. After data engineering, feature selection, and comparison of machine learning methods, the light gradient boosting machine model was found the best with hyperparameter tuning (precision = 0.818, recall = 0.816, f1 score = 0.817, roc-auc = 0.867). And the top 5 determinants were clinical features age at diagnosis, Nottingham Prognostic Index, cohort and genetic features rheb, nr3c1. The study shed light on rational allocation of medical resources and provided insights to early prevention, diagnosis and treatment of breast cancer with the identified risk clinical and genetic factors.

References

[1]  WHO (2023) Global Breast Cancer Initiative Implementation Framework: Assessing, Strengthening and Scaling up of Services for the Early Detection and Management of Breast Cancer: Executive Summary.
[2]  Luo, J., et al. (2022) Etiology of Breast Cancer: A Perspective from Epidemiologic Studies. Journal of the National Cancer Center, 2, 195-197.
https://doi.org/10.1016/j.jncc.2022.08.004
[3]  Pfob, A., et al. (2021) Identification of Breast Cancer Patients with Pathologic Complete Response in the Breast after Neoadjuvant Systemic Treatment by an Intelligent Vacuum-Assisted Biopsy. European Journal of Cancer, 143, 134-146.
https://doi.org/10.1016/j.ejca.2020.11.006
[4]  Lenkinski, R.E. (2022) Improving the Accuracy of Screening Dense Breasted Women for Breast Cancer by Combining Clinically Based Risk Assessment Models with Ultrasound Imaging. Academic Radiology, 29, S8-S9.
https://doi.org/10.1016/j.acra.2021.09.019
[5]  Jalalian, A., et al. (2013) Computer-Aided Detection/Diagnosis of Breast Cancer in Mammography and Ultrasound: A Review. Clinical Imaging, 37, 420-426.
https://doi.org/10.1016/j.clinimag.2012.09.024
[6]  Ruiz, A., et al. (2018) Surgical Resection versus Systemic Therapy for Breast Cancer Liver Metastases: Results of a European Case Matched Comparison. European Journal of Cancer, 95, 1-10.
https://doi.org/10.1016/j.ejca.2018.02.024
[7]  Ward, K.A., et al. (2023) Long-Term Adherence to Adjuvant Endocrine Therapy Following Various Radiotherapy Modalities in Early Stage Hormone Receptor Positive Breast Cancer. Clinical Breast Cancer, 23, 369-377.
https://doi.org/10.1016/j.clbc.2023.01.012
[8]  Jacobs, A.T., et al. (2022) Targeted Therapy for Breast Cancer: An Overview of Drug Classes and Outcomes. Biochemical Pharmacology, 204, Article ID: 115209.
https://doi.org/10.1016/j.bcp.2022.115209
[9]  Nemade, V. and Fegade, V. (2023) Machine Learning Techniques for Breast Cancer Prediction. Procedia Computer Science, 218, 1314-1320.
https://doi.org/10.1016/j.procs.2023.01.110
[10]  Khandezamin, Z., Naderan, M. and Rashti, M.J. (2020) Detection and Classification of Breast Cancer Using Logistic Regression Feature Selection and GMDH Classifier. Journal of Biomedical Informatics, 111, Article ID: 103591.
https://doi.org/10.1016/j.jbi.2020.103591
[11]  Pratheep, K.P., et al. (2021) An Efficient Classification Framework for Breast Cancer Using Hyper Parameter Tuned Random Decision Forest Classifier and Bayesian Optimization. Biomedical Signal Processing and Control, 68, Article ID: 102682.
https://doi.org/10.1016/j.bspc.2021.102682
[12]  Chakravarthy, S.S.R., Bharanidharan, N. and Rajaguru, H. (2023) Deep Learning-Based Metaheuristic Weighted K-Nearest Neighbor Algorithm for the Severity Classification of Breast Cancer. IRBM, 44, Article ID: 100749.
https://doi.org/10.1016/j.irbm.2022.100749
[13]  Pereira, B., et al. (2016) The Somatic Mutation Profiles of 2,433 Breast Cancers Refines Their Genomic and Transcriptomic Landscapes. Nature Communications, 7, Article No. 11479.
https://doi.org/10.1038/ncomms11908
[14]  Sundquist, M., et al. (1999) Applying the Nottingham Prognostic Index to a Swedish breast cancer population. Breast Cancer Research and Treatment, 53, 1-8.
https://doi.org/10.1023/A:1006052115874
[15]  Jones, C. and Lancaster, R. (2018) Evolution of Operative Technique for Mastectomy. Surgical Clinics of North America, 98, 835-844.
https://doi.org/10.1016/j.suc.2018.04.003
[16]  Guiu, S., et al. (2012) Molecular Subclasses of Breast Cancer: How Do We Define Them? The IMPAKT 2012 Working Group Statement†. Annals of Oncology, 23, 2997-3006.
https://doi.org/10.1093/annonc/mds586
[17]  Mazouni, C., et al. (2010) Is Quantitative Oestrogen Receptor Expression Useful in the Evaluation of the Clinical Prognosis? Analysis of a Homogeneous Series of 797 Patients with Prospective Determination of the ER Status Using Simultaneous EIA and IHC. European Journal of Cancer, 46, 2716-2725.
https://doi.org/10.1016/j.ejca.2010.05.021
[18]  Liu, D. and Zhou, K. (2020) BRAF/MEK Pathway Is Associated with Breast Cancer in ER-Dependent Mode and Improves ER Status-Based Cancer Recurrence Prediction. Clinical Breast Cancer, 20, 41-50, e8.
https://doi.org/10.1016/j.clbc.2019.08.005
[19]  Rana, M., et al. (2015) Breast Cancer Diagnosis and Recurrence Prediction Using Machine Learning Techniques. International Journal of Research in Engineering and Technology, 4, 372-376.
https://doi.org/10.15623/ijret.2015.0404066
[20]  Memon, M., et al. (2019) Breast Cancer Detection in the IOT Health Environment Using Modified Recursive Feature Selection. International Journal of Wireless and Mobile Computing, 2019, Article ID: 5176705.
https://doi.org/10.1155/2019/5176705
[21]  Minnoor, M. and Baths, V. (2023) Diagnosis of Breast Cancer Using Random Forests. Procedia Computer Science, 218, 429-437.
https://doi.org/10.1016/j.procs.2023.01.025
[22]  Jiang, Z., et al. (2021) A Light Gradient Boosting Machine-Enabled Early Prediction of Cardiotoxicity for Breast Cancer Patients. International Journal of Radiation Oncology, Biology, Physics, 111, e223.
https://doi.org/10.1016/j.ijrobp.2021.07.771
[23]  Abbasniya, M.R., et al. (2022) Classification of Breast Tumors Based on Histopathology Images Using Deep Features and Ensemble of Gradient Boosting Methods. Computers and Electrical Engineering, 103, Article ID: 108382.
https://doi.org/10.1016/j.compeleceng.2022.108382
[24]  Heard, J.J., et al. (2018) An Oncogenic Mutant of RHEB, RHEB Y35N, Exhibits an Altered Interaction with BRAF Resulting in Cancer Transformation. BMC Cancer, 18, Article No. 69.
https://doi.org/10.1186/s12885-017-3938-5
[25]  Gandhi, S., et al. (2020) Contribution of Immune Cells to Glucocorticoid Receptor Expression in Breast Cancer. International Journal of Molecular Sciences, 2, Article No. 4635.
https://doi.org/10.3390/ijms21134635

Full-Text

comments powered by Disqus

Contact Us

service@oalib.com

QQ:3279437679

WhatsApp +8615387084133

WeChat 1538708413