全部 标题 作者
关键词 摘要

OALib Journal期刊
ISSN: 2333-9721
费用:99美元

查看量下载量

相关文章

更多...

Estimating High-Order Functional Connectivity Networks for Mild Cognitive Impairment Identification Based on Topological Structure

DOI: 10.4236/jcc.2024.123002, PP. 14-31

Keywords: Ho-FCN, Sparse Representation, Mild Cognitive Impairment, Disease Recognition

Full-Text   Cite this paper   Add to My Lib

Abstract:

Functional connectivity networks (FCNs) are important in the diagnosis of neurological diseases and the understanding of brain tissue patterns. Recently, many methods, such as Pearson’s correlation (PC), Sparse representation (SR), and Sparse low-rank representation have been proposed to estimate FCNs. Despite their popularity, they only capture the low-order connections of the brain regions, failing to encode more complex relationships (i.e. , high-order relationships). Although researchers have proposed high-order methods, like PC + PC and SR + SR, aiming to build FCNs that can reflect more real state of the brain. However, such methods only consider the relationships between brain regions during the FCN construction process, neglecting the potential shared topological structure information between FCNs of different subjects. In addition, the low-order relationships are always neglected during the construction of high-order FCNs. To address these issues, in this paper we proposed a novel method, namely Ho-FCNTops, towards estimating high-order FCNs based on brain topological structure. Specifically, inspired by the Group-constrained sparse representation (GSR), we first introduced a prior assumption that all subjects share the same topological structure in the construction of the low-order FCNs. Subsequently, we employed the Correlation-reserved embedding (COPE) to eliminate noise and redundancy from the low-order FCNs. Meanwhile, we retained the original low-order relationships during the embedding process to obtain new node representations. Finally, we utilized the SR method on the obtained new node representations to construct the Ho-FCNTops required for disease identification. To validate the effectiveness of the proposed method, experiments were conducted on 137 subjects from the Alzheimer’s Disease Neuroimaging Initiative (ADNI) database to identify Mild Cognitive Impairment (MCI) patients from the normal controls. The experimental results demonstrate superior performance compared to baseline methods.

References

[1]  Lee, M.H., Smyser, C.D. and Shimony, J.S. (2013) Resting-State fMRI: A Review of Methods and Clinical Applications. American Journal of Neuroradiology, 34, 1866-1872.
https://doi.org/10.3174/ajnr.A3263
[2]  Canario, E., Chen, D. and Biswal, B. (2021) A Review of Resting-State fMRI and Its Use to Examine Psychiatric Disorders. Psychoradiology, 1, 42-53.
https://doi.org/10.1093/psyrad/kkab003
[3]  Bondi, E., Maggioni, E., Brambilla, P. and Delvecchio, G. (2023) A Systematic Review on the Potential Use of Machine Learning to Classify Major Depressive Disorder from Healthy Controls Using Resting State fMRI Measures. Neuroscience & Biobehavioral Reviews, 144, Article ID: 104972.
https://doi.org/10.1093/psyrad/kkab003
[4]  Pilmeyer, J., Huijbers, W., Lamerichs, R., Jansen, J.F., Breeuwer, M. and Zinger, S. (2022) Functional MRI in Major Depressive Disorder: A Review of Findings, Limitations, and Future Prospects. Journal of Neuroimaging, 32, 582-595.
https://doi.org/10.1111/jon.13011
[5]  An, L., Cao, Q.-J., Sui, M.-Q., Sun, L., Zou, Q.-H., Zang, Y.-F. and Wang, Y.-F. (2013) Local Synchronization and Amplitude of the Fluctuation of Spontaneous Brain Activity in Attention-Deficit/Hyperactivity Disorder: A Resting-State fMRI Study. Neuroscience Bulletin, 29, 603-613.
https://doi.org/10.1007/s12264-013-1353-8
[6]  Wu, Q.-Z., Li, D.-M., Kuang, W.-H., Zhang, T.-J., Lui, S., Huang, X.-Q., Chan, R.C., Kemp, G.J. and Gong, Q.-Y. (2011) Abnormal Regional Spontaneous Neural Activity in Treatment-Refractory Depression Revealed by Resting-State fMRI. Human Brain Mapping, 32, 1290-1299.
https://doi.org/10.1002/hbm.21108
[7]  Ibrahim, B., Suppiah, S., Ibrahim, N., Mohamad, M., Hassan, H.A., Nasser, N.S. and Saripan, M.I. (2021) Diagnostic Power of Resting-State fMRI for Detection of Network Connectivity in Alzheimer’s Disease and Mild Cognitive Impairment: A Systematic Review. Human Brain Mapping, 42, 2941-2968.
https://doi.org/10.1002/hbm.25369
[8]  Agosta, F., Pievani, M., Geroldi, C., Copetti, M., Frisoni, G.B. and Filippi, M. (2012) Resting State fMRI in Alzheimer’s Disease: Beyond the Default Mode Network. Neurobiology of Aging, 33, 1564-1578.
https://doi.org/10.1016/j.neurobiolaging.2011.06.007
[9]  Smith, S.M., Vidaurre, D., Beckmann, C.F., Glasser, M.F., Jenkinson, M., Miller, K.L., Nichols, T.E., Robinson, E.C., Salimi-Khorshidi, G., Woolrich, M.W., et al. (2013) Functional Connectomics from Resting-State fMRI. Trends in Cognitive Sciences, 17, 666-682.
https://doi.org/10.1016/j.tics.2013.09.016
[10]  Wee, C.-Y., Yap, P.-T., Zhang, D., Wang, L. and Shen, D. (2014) Group Constrained Sparse fMRI Connectivity Modeling for Mild Cognitive Impairment Identification. Brain Structure and Function, 219, 641-656.
https://doi.org/10.1007/s00429-013-0524-8
[11]  Qiao, L., Zhang, L., Chen, S. and Shen, D. (2018) Data-Driven Graph Construction and Graph Learning: A Review. Neurocomputing, 312, 336-351.
https://doi.org/10.1016/j.neucom.2018.05.084
[12]  Peng, J., Wang, P., Zhou, N. and Zhu, J. (2009) Partial Correlation Estimation by Joint Sparse Regression Models. Journal of the American Statistical Association, 104, 735-746.
https://doi.org/10.1198/jasa.2009.0126
[13]  Sun, L., Patel, R., Liu, J., Chen, K., Wu, T., Li, J., Reiman, E. and Ye, J. (2009) Mining Brain Region Connectivity for Alzheimer’s Disease Study via Sparse Inverse Covariance Estimation. Proceedings of the 15th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, Paris, 28 June-1 July 2009, 1335-1344.
https://doi.org/10.1145/1557019.1557162
[14]  Zhang, H., Chen, X., Shi, F., Li, G., Kim, M., Giannakopoulos, P., Haller, S. and Shen, D. (2016) Topographical Information-Based High-Order Functional Connectivity and Its Application in Abnormality Detection for Mild Cognitive Impairment. Journal of Alzheimer’s Disease, 54, 1095-1112.
https://doi.org/10.3233/JAD-160092
[15]  Wang, J., Jie, B., Zhang, X., Li, W., Wu, Z. and Yang, Y. (2023) Sparse-Learning Based High-Order Dynamic Functional Connectivity Networks for Brain Disease Classification. Proceedings of the 2023 7th International Conference on Machine Learning and Soft Computing, Chongqing, 5-7 January 2023, 161-167.
https://doi.org/10.1145/3583788.3583812
[16]  Zhao, F., Zhang, X., Thung, K.-H., Mao, N., Lee, S.-W. and Shen, D. (2021) Constructing Multi-View High-Order Functional Connectivity Networks for Diagnosis of Autism Spectrum Disorder. IEEE Transactions on Biomedical Engineering, 69, 1237-1250.
https://doi.org/10.1109/TBME.2021.3122813
[17]  Guo, T., Zhang, Y., Xue, Y., Qiao, L. and Shen, D. (2021) Brain Function Network: Higher Order vs. More Discrimination. Frontiers in Neuroscience, 15, Article ID: 696639.
https://doi.org/10.3389/fnins.2021.696639
[18]  Su, H., Zhang, L., Qiao, L. and Liu, M. (2022) Estimating High-Order Brain Functional Networks by Correlation-Preserving Embedding. Medical & Biological Engineering & Computing, 60, 2813-2823.
https://doi.org/10.1007/s11517-022-02628-7
[19]  Biswal, B., Zerrin Yetkin, F., Haughton, V.M. and Hyde, J.S. (1995) Functional Connectivity in the Motor Cortex of Resting Human Brain Using Echoplanar MRI. Magnetic Resonance in Medicine, 34, 537-541.
https://doi.org/10.1002/mrm.1910340409
[20]  Marrelec, G., Krainik, A., Duffau, H., P’el’egrini-Issac, M., Leh’ericy, S., Doyon, J. and Benali, H. (2006) Partial Correlation for Functional Brain Interactivity Investigation in Functional MRI. Neuroimage, 32, 228-237.
https://doi.org/10.1016/j.neuroimage.2005.12.057
[21]  Lee, H., Lee, D.S., Kang, H., Kim, B.-N. and Chung, M.K. (2011) Sparse Brain Network Recovery under Compressed Sensing. IEEE Transactions on Medical Imaging, 30, 1154-1165.
https://doi.org/10.1109/TMI.2011.2140380
[22]  Plis, S.M., Sui, J., Lane, T., Roy, S., Clark, V.P., Potluru, V.K., Huster, R.J., Michael, A., Sponheim, S.R., Weisend, M.P., et al., (2014) Highorder Interactions Observed in Multi-Task Intrinsic Networks Are Dominant Indicators of Aberrant Brain Function in Schizophrenia. NeuroImage, 102, 35-48.
https://doi.org/10.1016/j.neuroimage.2013.07.041
[23]  Chen, X., Zhang, H., Gao, Y., Wee, C.-Y., Li, G., Shen, D. and Initiative, A.D.N. (2016) High-Order Resting-State Functional Connectivity Network for MCI Classification. Human Brain Mapping, 37, 3282-3296.
https://doi.org/10.1002/hbm.23240
[24]  Liu, J., Ji, S. and Ye, J. (2012) Multi-Task Feature Learning via Efficient l2, 1-Norm Minimization.
[25]  Guyon, I. and Elisseeff, A. (2003) An Introduction to Variable and Feature Selection. Journal of Machine Learning Research, 3, 1157-1182.
[26]  Szenkovits, A., Meszl’enyi, R., Buza, K., Gask’o, N., Lung, R.I. and Suciu, M. (2018) Feature Selection with a Genetic Algorithm for Classification of Brain Imaging Data. In: Stańczyk, U., Zielosko, B. and Jain, L.C., Eds., Advances in Feature Selection for Data and Pattern Recognition, Springer, Berlin, 185-202.
https://doi.org/10.1007/978-3-319-67588-6_10
[27]  Chang, C.-C. and Lin, C.-J. (2011) Libsvm: A Library for Support Vector Machines. ACM Transactions on Intelligent Systems and Technology (TIST), 2, Article No. 27.
https://doi.org/10.1145/1961189.1961199
[28]  Dadi, K., Rahim, M., Abraham, A., Chyzhyk, D., Milham, M., Thirion, B., Varoquaux, G., Initiative, A.D.N., et al. (2019) Benchmarking Functional Connectome-Based Predictive Models for Resting-State fMRI. NeuroImage, 192, 115-134.
https://doi.org/10.1016/j.neuroimage.2019.02.062
[29]  Sun, L. and Guo, T. (2020) Functional Brain Network Learning Based on Spatial Similarity for Brain Disorders Identification. Journal of Applied Mathematics and Physics, 8, 2427-2437.
https://doi.org/10.4236/jamp.2020.811179
[30]  Xue, Y., Zhang, L., Qiao, L. and Shen, D. (2020) Estimating Sparse Functional Brain Networks with Spatial Constraints for MCI Identification. PLOS ONE, 15, e0235039.
https://doi.org/10.1371/journal.pone.0235039
[31]  Ruan, Q., D’Onofrio, G., Sancarlo, D., Bao, Z., Greco, A. and Yu, Z. (2016) Potential Neuroimaging Biomarkers of Pathologic Brain Changes in Mild Cognitive Impairment and Alzheimer’s Disease: A Systematic Review. BMC Geriatrics, 16, Article No. 104.
https://doi.org/10.1186/s12877-016-0281-7
[32]  M’arquez, F. and Yassa, M.A. (2019) Neuroimaging Biomarkers for Alzheimer’s Disease. Molecular Neurodegeneration, 14, Article No. 21.
https://doi.org/10.1186/s13024-019-0325-5
[33]  Risacher, S.L. and Saykin, A.J. (2013) Neuroimaging and Other Biomarkers for Alzheimer’s Disease: The Changing Landscape of Early Detection. Annual Review of Clinical Psychology, 9, 621-648.
https://doi.org/10.1146/annurev-clinpsy-050212-185535

Full-Text

comments powered by Disqus

Contact Us

service@oalib.com

QQ:3279437679

WhatsApp +8615387084133

WeChat 1538708413